Variant report

Variant	rs6043344
Chromosome Location	chr20:15503742-15503743
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16995871	1.00[EUR][1000 genomes]
rs6034206	1.00[EUR][1000 genomes]
rs6043312	1.00[EUR][1000 genomes]
rs6043313	1.00[EUR][1000 genomes]
rs6043314	1.00[EUR][1000 genomes]
rs6043316	1.00[EUR][1000 genomes]
rs6043319	1.00[EUR][1000 genomes]
rs6043326	1.00[EUR][1000 genomes]
rs6043334	1.00[EUR][1000 genomes]
rs6043336	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6043337	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6043338	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6043340	1.00[EUR][1000 genomes]
rs6043341	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6043343	1.00[EUR][1000 genomes]
rs6043361	1.00[EUR][1000 genomes]
rs6043371	1.00[EUR][1000 genomes]
rs6105425	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6110647	1.00[EUR][1000 genomes]
rs73260615	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv833927	chr20:15362602-15520185	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15499400-15504000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr20:15502200-15504600	Enhancers	Fetal Brain Male	brain
3	chr20:15503600-15504600	Enhancers	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links