Variant report
| Variant | rs6043326 |
|---|---|
| Chromosome Location | chr20:15478767-15478768 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:15474862..15477622-chr20:15478016..15479786,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12106197 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs1233773 | 1.00[CEU][hapmap] |
| rs16995871 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs200777 | 1.00[CEU][hapmap] |
| rs6034206 | 1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6034207 | 1.00[CEU][hapmap] |
| rs6034208 | 1.00[CEU][hapmap];0.93[YRI][hapmap] |
| rs6043312 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6043313 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs6043314 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs6043316 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs6043319 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6043334 | 1.00[EUR][1000 genomes] |
| rs6043336 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs6043337 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs6043338 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs6043340 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6043341 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs6043343 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6043344 | 1.00[EUR][1000 genomes] |
| rs6043357 | 1.00[CEU][hapmap] |
| rs6043361 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6043371 | 1.00[EUR][1000 genomes] |
| rs6105425 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs6110647 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7274583 | 1.00[CEU][hapmap] |
| rs73260615 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv833927 | chr20:15362602-15520185 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:15477000-15479600 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr20:15478600-15480800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
