Variant report

Variant	rs6044024
Chromosome Location	chr20:16472860-16472861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1008506	0.84[CEU][hapmap]
rs10485555	0.88[CEU][hapmap]
rs10485556	0.88[CEU][hapmap]
rs12479497	0.84[CEU][hapmap]
rs12480660	0.85[CEU][hapmap]
rs12480678	0.89[CEU][hapmap]
rs1555194	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs16997790	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16997803	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17673447	0.88[CEU][hapmap]
rs2038260	0.84[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs2057123	0.92[JPT][hapmap];1.00[YRI][hapmap]
rs2057124	0.92[JPT][hapmap];1.00[YRI][hapmap]
rs2143983	0.94[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2295113	0.85[CEU][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2295114	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2295115	0.84[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2328042	0.92[JPT][hapmap];1.00[YRI][hapmap]
rs2328043	0.92[JPT][hapmap]
rs4536714	0.92[JPT][hapmap]
rs6034503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6034505	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6034506	0.94[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6034509	0.84[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6034510	0.85[CEU][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6034511	0.84[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6034512	0.92[JPT][hapmap];1.00[YRI][hapmap]
rs6034513	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6034514	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6034515	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6034516	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6034517	0.84[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6034518	0.83[CEU][hapmap];0.82[JPT][hapmap];0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6044009	0.84[CEU][hapmap]
rs6044021	0.88[CEU][hapmap]
rs6044022	0.94[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044023	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6044027	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044028	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044029	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044030	0.84[CEU][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044031	0.95[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044033	0.90[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap]
rs6044034	0.95[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044035	0.85[CEU][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044036	0.92[JPT][hapmap];1.00[YRI][hapmap]
rs6044037	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6044038	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044039	0.85[CEU][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6044040	0.85[CEU][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044041	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044042	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044043	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044044	0.84[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044047	0.92[JPT][hapmap];1.00[YRI][hapmap]
rs6044048	0.85[CEU][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044049	0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044050	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044051	0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044052	0.95[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044053	0.92[JPT][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044054	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044055	0.95[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044056	0.85[CEU][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044058	0.85[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044059	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6044060	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044061	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044067	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6044069	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6044073	0.85[CEU][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes]
rs6131830	0.94[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6131831	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6131836	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs6131837	0.84[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6131838	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6131839	0.91[JPT][hapmap];1.00[YRI][hapmap]
rs6135763	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6135764	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6135765	0.94[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6135766	0.85[CEU][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6135768	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6135769	0.84[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6135775	0.84[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6135776	0.84[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6135777	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6135778	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6135779	0.85[EUR][1000 genomes]
rs6135780	0.84[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6135783	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6135784	0.84[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62199806	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62199807	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62199811	0.87[EUR][1000 genomes]
rs720592	0.84[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs720593	0.84[CEU][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs720594	0.85[CEU][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7272792	0.85[CEU][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73597776	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73597777	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs738556	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8126414	0.85[CEU][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8182966	0.84[CEU][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8184826	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16410200-16473200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr20:16431400-16508200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:16448000-16483600	Weak transcription	Pancreas	Pancrea
4	chr20:16449400-16500600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr20:16451200-16488400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr20:16451400-16478600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr20:16453400-16473400	Weak transcription	Left Ventricle	heart
8	chr20:16453600-16508200	Weak transcription	Stomach Mucosa	stomach
9	chr20:16454800-16483600	Weak transcription	Spleen	Spleen
10	chr20:16456200-16483800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr20:16456800-16473800	Weak transcription	Primary B cells from cord blood	blood
12	chr20:16456800-16487600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr20:16456800-16488200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr20:16458600-16476400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr20:16458600-16484200	Weak transcription	A549	lung
16	chr20:16458800-16477400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr20:16458800-16480800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr20:16458800-16484000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr20:16458800-16486200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr20:16460800-16473800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr20:16460800-16488200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr20:16461000-16491200	Weak transcription	Placenta	Placenta
23	chr20:16461200-16479600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr20:16462000-16483800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr20:16463000-16498000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr20:16463800-16484000	Weak transcription	Gastric	stomach
27	chr20:16463800-16495000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr20:16464400-16491400	Weak transcription	Fetal Kidney	kidney
29	chr20:16464600-16484000	Weak transcription	Fetal Lung	lung
30	chr20:16465200-16484200	Weak transcription	Colon Smooth Muscle	Colon
31	chr20:16465400-16488200	Weak transcription	Small Intestine	intestine
32	chr20:16465800-16488000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr20:16466000-16488000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr20:16466600-16489600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr20:16466800-16473800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr20:16467000-16508800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr20:16467400-16473800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr20:16467400-16483800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr20:16467400-16484200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr20:16467400-16488000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr20:16467400-16500800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr20:16467400-16507000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr20:16467800-16494600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr20:16468400-16474200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr20:16468400-16474400	Strong transcription	Primary T cells from cord blood	blood
46	chr20:16468800-16474400	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr20:16468800-16482600	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr20:16469000-16477000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr20:16469200-16474800	Strong transcription	Duodenum Mucosa	Duodenum
50	chr20:16469400-16485600	Weak transcription	Brain Cingulate Gyrus	brain

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