Variant report

Variant	rs6135763
Chromosome Location	chr20:16468026-16468027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1555194	0.94[JPT][hapmap]
rs16997807	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2038260	0.87[JPT][hapmap]
rs2057123	0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2057124	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2143983	0.89[JPT][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs2295113	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs2295115	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs2328042	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2328043	0.84[CHB][hapmap];0.94[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4536714	0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6034506	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6034509	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6034510	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6034511	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6034512	1.00[ASW][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6034517	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs6044011	0.88[JPT][hapmap]
rs6044022	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6044023	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs6044024	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6044030	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6044031	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6044033	0.88[JPT][hapmap]
rs6044034	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6044036	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6044039	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6044040	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6044044	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6044047	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6044048	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6044049	0.83[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs6044051	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs6044052	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6044053	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6044055	0.94[JPT][hapmap];1.00[YRI][hapmap]
rs6044056	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6044057	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6044058	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6044071	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6044072	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6044073	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs6131830	0.89[JPT][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs6131836	0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6131837	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6131839	1.00[ASW][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6135765	0.89[JPT][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs6135766	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6135769	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6135772	0.83[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6135775	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6135776	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6135780	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6135784	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs6135785	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs720592	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs720593	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs720594	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs7272792	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs8126414	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs8182966	0.88[JPT][hapmap];1.00[YRI][hapmap]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16410200-16473200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr20:16420800-16471400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr20:16431400-16508200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr20:16440400-16468800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr20:16443600-16468600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr20:16443800-16469600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr20:16443800-16469600	Weak transcription	Lung	lung
8	chr20:16448000-16483600	Weak transcription	Pancreas	Pancrea
9	chr20:16449400-16500600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr20:16451200-16488400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr20:16451400-16478600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:16453000-16469600	Weak transcription	Ovary	ovary
13	chr20:16453400-16470000	Weak transcription	Esophagus	oesophagus
14	chr20:16453400-16473400	Weak transcription	Left Ventricle	heart
15	chr20:16453600-16471800	Weak transcription	NHEK	skin
16	chr20:16453600-16508200	Weak transcription	Stomach Mucosa	stomach
17	chr20:16454800-16483600	Weak transcription	Spleen	Spleen
18	chr20:16455600-16468800	Weak transcription	Colonic Mucosa	Colon
19	chr20:16456200-16483800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr20:16456400-16468600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr20:16456800-16468800	Weak transcription	Brain Substantia Nigra	brain
22	chr20:16456800-16469200	Weak transcription	Brain Hippocampus Middle	brain
23	chr20:16456800-16471600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr20:16456800-16472200	Weak transcription	Liver	Liver
25	chr20:16456800-16473800	Weak transcription	Primary B cells from cord blood	blood
26	chr20:16456800-16487600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr20:16456800-16488200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr20:16458600-16476400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr20:16458600-16484200	Weak transcription	A549	lung
30	chr20:16458800-16471200	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr20:16458800-16471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr20:16458800-16471400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr20:16458800-16477400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr20:16458800-16480800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr20:16458800-16484000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr20:16458800-16486200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr20:16459000-16471400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr20:16460000-16469600	Weak transcription	Fetal Stomach	stomach
39	chr20:16460800-16473800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr20:16460800-16488200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr20:16461000-16471400	Weak transcription	Fetal Intestine Large	intestine
42	chr20:16461000-16472200	Weak transcription	HepG2	liver
43	chr20:16461000-16491200	Weak transcription	Placenta	Placenta
44	chr20:16461200-16479600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr20:16462000-16483800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr20:16462800-16471400	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr20:16463000-16498000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr20:16463200-16468400	Weak transcription	Fetal Brain Female	brain
49	chr20:16463800-16471600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr20:16463800-16484000	Weak transcription	Gastric	stomach

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