The 2.0 version of rSNPBase

Variant report

Variant rs6135785
Chromosome Location chr20:16507305-16507306
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16431400-16508200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr20:16453600-16508200 Weak transcription Stomach Mucosa stomach
3 chr20:16467000-16508800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
4 chr20:16469600-16507600 Weak transcription HSMMtube muscle
5 chr20:16470200-16508600 Weak transcription NHLF lung
6 chr20:16472800-16517400 Weak transcription Primary hematopoietic stem cells short term culture blood
7 chr20:16480600-16509400 Weak transcription K562 blood
8 chr20:16485200-16508600 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr20:16485600-16508000 Weak transcription Primary T cells fromperipheralblood blood
10 chr20:16485800-16521200 Weak transcription Right Ventricle heart
11 chr20:16488800-16508800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr20:16488800-16509200 Weak transcription Small Intestine intestine
13 chr20:16489000-16511000 Weak transcription Colonic Mucosa Colon
14 chr20:16489200-16508600 Weak transcription HepG2 liver
15 chr20:16489200-16512200 Weak transcription Gastric stomach
16 chr20:16489200-16521000 Weak transcription Spleen Spleen
17 chr20:16489400-16507800 Weak transcription NHEK skin
18 chr20:16489400-16510800 Weak transcription Lung lung
19 chr20:16489400-16517600 Weak transcription Pancreas Pancrea
20 chr20:16490400-16510200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr20:16491800-16508600 Weak transcription Fetal Kidney kidney
22 chr20:16491800-16511000 Weak transcription Esophagus oesophagus
23 chr20:16492000-16508600 Weak transcription Fetal Adrenal Gland Adrenal Gland
24 chr20:16492000-16509800 Weak transcription Rectal Smooth Muscle rectum
25 chr20:16492400-16508600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr20:16492400-16517800 Weak transcription Colon Smooth Muscle Colon
27 chr20:16492600-16528800 Weak transcription Primary B cells from cord blood blood
28 chr20:16493000-16521200 Weak transcription Liver Liver
29 chr20:16493200-16507400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr20:16493200-16507600 Weak transcription Left Ventricle heart
31 chr20:16493600-16508800 Weak transcription Fetal Lung lung
32 chr20:16493600-16509400 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr20:16493600-16516200 Weak transcription Primary hematopoietic stem cells blood
34 chr20:16493800-16508200 Weak transcription Psoas Muscle Psoas
35 chr20:16496000-16509400 Weak transcription Monocytes-CD14+_RO01746 blood
36 chr20:16497000-16507600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr20:16497400-16509600 Weak transcription Brain Inferior Temporal Lobe brain
38 chr20:16497600-16508400 Weak transcription Fetal Brain Female brain
39 chr20:16497600-16509200 Weak transcription Brain Angular Gyrus brain
40 chr20:16497600-16521600 Weak transcription Brain Hippocampus Middle brain
41 chr20:16497800-16507600 Weak transcription Fetal Intestine Large intestine
42 chr20:16498400-16507800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr20:16499200-16508600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr20:16501200-16507800 Weak transcription Aorta Aorta
45 chr20:16501400-16508000 Weak transcription Fetal Intestine Small intestine
46 chr20:16501400-16509000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr20:16501400-16511800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr20:16501600-16507400 Weak transcription Fetal Stomach stomach
49 chr20:16501600-16507600 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr20:16501600-16508600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015