Variant report

Variant	rs6131839
Chromosome Location	chr20:16507826-16507827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16507244..16509021-chr20:16550552..16553187,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs16997807	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2038260	0.81[JPT][hapmap]
rs2057123	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2057124	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2143983	0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2295113	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs2295115	0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs2328042	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2328043	0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4536714	1.00[CEU][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6034506	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6034509	0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs6034510	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6034511	0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs6034512	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6034517	0.82[CHD][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs6034518	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs6044022	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6044023	0.88[JPT][hapmap];1.00[YRI][hapmap]
rs6044024	0.91[JPT][hapmap];1.00[YRI][hapmap]
rs6044030	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6044031	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6044033	0.82[JPT][hapmap]
rs6044034	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6044036	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6044039	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6044040	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6044044	0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs6044047	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6044048	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6044049	0.88[JPT][hapmap];1.00[YRI][hapmap]
rs6044051	0.80[CHD][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs6044052	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6044053	0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs6044055	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6044056	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6044057	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6044058	1.00[YRI][hapmap]
rs6044071	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044072	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044073	0.88[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs6131830	0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6131836	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6131837	0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs6135763	1.00[ASW][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6135765	0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6135766	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs6135769	0.83[JPT][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs6135772	1.00[CEU][hapmap];0.82[CHD][hapmap];0.96[GIH][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6135775	0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs6135776	0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs6135780	0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs6135784	0.82[CHD][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs6135785	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs720592	0.82[CHD][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs720593	0.88[JPT][hapmap];1.00[YRI][hapmap]
rs720594	0.88[JPT][hapmap];1.00[YRI][hapmap]
rs7272792	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs8126414	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs8182966	0.82[JPT][hapmap];1.00[YRI][hapmap]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16431400-16508200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:16453600-16508200	Weak transcription	Stomach Mucosa	stomach
3	chr20:16467000-16508800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr20:16470200-16508600	Weak transcription	NHLF	lung
5	chr20:16472800-16517400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr20:16480600-16509400	Weak transcription	K562	blood
7	chr20:16485200-16508600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr20:16485600-16508000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr20:16485800-16521200	Weak transcription	Right Ventricle	heart
10	chr20:16488800-16508800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr20:16488800-16509200	Weak transcription	Small Intestine	intestine
12	chr20:16489000-16511000	Weak transcription	Colonic Mucosa	Colon
13	chr20:16489200-16508600	Weak transcription	HepG2	liver
14	chr20:16489200-16512200	Weak transcription	Gastric	stomach
15	chr20:16489200-16521000	Weak transcription	Spleen	Spleen
16	chr20:16489400-16510800	Weak transcription	Lung	lung
17	chr20:16489400-16517600	Weak transcription	Pancreas	Pancrea
18	chr20:16490400-16510200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr20:16491800-16508600	Weak transcription	Fetal Kidney	kidney
20	chr20:16491800-16511000	Weak transcription	Esophagus	oesophagus
21	chr20:16492000-16508600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr20:16492000-16509800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr20:16492400-16508600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr20:16492400-16517800	Weak transcription	Colon Smooth Muscle	Colon
25	chr20:16492600-16528800	Weak transcription	Primary B cells from cord blood	blood
26	chr20:16493000-16521200	Weak transcription	Liver	Liver
27	chr20:16493600-16508800	Weak transcription	Fetal Lung	lung
28	chr20:16493600-16509400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr20:16493600-16516200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr20:16493800-16508200	Weak transcription	Psoas Muscle	Psoas
31	chr20:16496000-16509400	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr20:16497400-16509600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr20:16497600-16508400	Weak transcription	Fetal Brain Female	brain
34	chr20:16497600-16509200	Weak transcription	Brain Angular Gyrus	brain
35	chr20:16497600-16521600	Weak transcription	Brain Hippocampus Middle	brain
36	chr20:16499200-16508600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr20:16501400-16508000	Weak transcription	Fetal Intestine Small	intestine
38	chr20:16501400-16509000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr20:16501400-16511800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr20:16501600-16508600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr20:16504800-16508800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr20:16505400-16508200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr20:16505800-16509200	Strong transcription	Primary T cells from cord blood	blood
44	chr20:16506000-16508000	Enhancers	H1 Cell Line	embryonic stem cell
45	chr20:16506000-16508000	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr20:16506000-16508000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr20:16506000-16508200	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr20:16506000-16508400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr20:16506200-16508400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr20:16506200-16508600	Weak transcription	Duodenum Mucosa	Duodenum

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