Variant report

Variant	rs60541388
Chromosome Location	chr14:70956362-70956363
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs2233133	1.00[AMR][1000 genomes]
rs2233134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2332427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36045882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55945353	1.00[EUR][1000 genomes]
rs57439677	1.00[EUR][1000 genomes]
rs61734856	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148976	1.00[EUR][1000 genomes]
rs73290343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73290384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73290386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291971	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291974	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291978	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73292002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73293944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73293959	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8006905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8008053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010985	1.00[AMR][1000 genomes]
rs8011142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8011336	1.00[AMR][1000 genomes]
rs8012392	1.00[AMR][1000 genomes]
rs8014629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70949200-70956400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr14:70951400-70957600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr14:70954400-70957400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr14:70954800-70956400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:70954800-70958600	ZNF genes & repeats	Lung	lung
6	chr14:70954800-70958800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr14:70955000-70957800	Weak transcription	HSMMtube	muscle
8	chr14:70955000-70958600	ZNF genes & repeats	Aorta	Aorta
9	chr14:70955000-70959200	ZNF genes & repeats	Adipose Nuclei	Adipose
10	chr14:70955400-70959200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr14:70955600-70956600	ZNF genes & repeats	Left Ventricle	heart
12	chr14:70955600-70957200	Strong transcription	Stomach Smooth Muscle	stomach
13	chr14:70955600-70965600	Weak transcription	Right Ventricle	heart
14	chr14:70955800-70956800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:70955800-70957000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
16	chr14:70955800-70958600	ZNF genes & repeats	Ovary	ovary
17	chr14:70955800-70958800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:70955800-70959200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
19	chr14:70956000-70956400	Strong transcription	Liver	Liver
20	chr14:70956000-70956600	Strong transcription	Brain Cingulate Gyrus	brain
21	chr14:70956000-70957000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
22	chr14:70956000-70958600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
23	chr14:70956000-70959200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
24	chr14:70956200-70956400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr14:70956200-70956600	ZNF genes & repeats	Primary T cells from cord blood	blood
26	chr14:70956200-70956600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
27	chr14:70956200-70957000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:70956200-70957400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr14:70956200-70958600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
30	chr14:70956200-70958600	ZNF genes & repeats	Brain Anterior Caudate	brain

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