Variant report

Variant	rs8006905
Chromosome Location	chr14:70997907-70997908
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2233133	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2233134	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2332427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36045882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55945353	1.00[EUR][1000 genomes]
rs57439677	1.00[EUR][1000 genomes]
rs57974328	1.00[AMR][1000 genomes]
rs60541388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61734856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148976	1.00[EUR][1000 genomes]
rs73290343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73290384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73290386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73292002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73293944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73293959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8008053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010985	1.00[AMR][1000 genomes]
rs8011142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8011336	1.00[AMR][1000 genomes]
rs8012392	1.00[AMR][1000 genomes]
rs8014629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70982000-71003600	Weak transcription	HSMM	muscle
2	chr14:70982400-71003200	Weak transcription	Psoas Muscle	Psoas
3	chr14:70985800-71003800	Weak transcription	HSMMtube	muscle
4	chr14:70987800-71005800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:70988000-71028200	Weak transcription	Esophagus	oesophagus
6	chr14:70988000-71029800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr14:70988400-71003800	Weak transcription	Primary B cells from cord blood	blood
8	chr14:70988800-71028800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr14:70990400-71029600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr14:70991200-71006400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr14:70991400-70999400	Weak transcription	Primary T cells from cord blood	blood
12	chr14:70991400-71003800	Weak transcription	Brain Substantia Nigra	brain
13	chr14:70991400-71028200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:70991600-70998800	Weak transcription	Brain Anterior Caudate	brain
15	chr14:70991600-70999000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:70991600-70999200	Weak transcription	Brain Angular Gyrus	brain
17	chr14:70991600-71001200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:70991600-71003800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:70991600-71003800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:70991600-71003800	Weak transcription	Aorta	Aorta
21	chr14:70991600-71003800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:70991600-71003800	Weak transcription	Ovary	ovary
23	chr14:70991600-71003800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr14:70991600-71003800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr14:70991600-71003800	Weak transcription	Spleen	Spleen
26	chr14:70991600-71004000	Weak transcription	Right Ventricle	heart
27	chr14:70991600-71004000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr14:70991600-71004200	Weak transcription	Pancreas	Pancrea
29	chr14:70991600-71014600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:70991600-71022400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr14:70991600-71028200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr14:70991600-71028800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:70991800-70998800	Weak transcription	Liver	Liver
34	chr14:70991800-70999200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr14:70991800-71002200	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr14:70991800-71003800	Weak transcription	Left Ventricle	heart
37	chr14:70991800-71011800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr14:70992000-70999000	Weak transcription	Adipose Nuclei	Adipose
39	chr14:70992200-71022600	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links