Variant report

Variant	rs60572869
Chromosome Location	chr6:28441484-28441485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28435580..28437630-chr6:28438872..28441704,3	K562	blood:
2	chr6:28439833..28442457-chr6:28444087..28445885,2	K562	blood:
3	chr6:28422985..28425247-chr6:28440349..28442926,2	K562	blood:
4	chr6:28438384..28441784-chr6:28470491..28474037,3	K562	blood:
5	chr6:28436210..28439439-chr6:28440893..28443830,3	K562	blood:
6	chr6:28441214..28445163-chr6:28446286..28449658,4	K562	blood:
7	chr6:28439477..28442256-chr6:28509445..28511862,2	K562	blood:
8	chr6:28302344..28303875-chr6:28441340..28443590,2	K562	blood:
9	chr6:28440403..28442381-chr6:28583746..28585382,2	K562	blood:
10	chr6:28440523..28445742-chr6:28446027..28449241,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000232040	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000219262	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs55824022	1.00[AMR][1000 genomes]
rs55824759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56149387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56202543	1.00[AMR][1000 genomes]
rs56210889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57264899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57322407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57378414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57944534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58096372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58676312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58973509	1.00[AMR][1000 genomes]
rs59373145	1.00[AMR][1000 genomes]
rs60534266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60706469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60971314	1.00[AMR][1000 genomes]
rs61191532	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61511418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61624419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740946	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740949	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740953	1.00[AMR][1000 genomes]
rs73740954	1.00[AMR][1000 genomes]
rs73742519	1.00[AMR][1000 genomes]
rs73742523	1.00[AMR][1000 genomes]
rs73742540	1.00[AMR][1000 genomes]
rs73742556	1.00[AMR][1000 genomes]
rs73742557	1.00[AMR][1000 genomes]
rs73743509	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28436800-28442400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28438600-28442400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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