Variant report

Variant	rs73740945
Chromosome Location	chr6:28443253-28443254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28436210..28439439-chr6:28440893..28443830,3	K562	blood:
2	chr6:28441214..28445163-chr6:28446286..28449658,4	K562	blood:
3	chr6:28302344..28303875-chr6:28441340..28443590,2	K562	blood:
4	chr6:28440523..28445742-chr6:28446027..28449241,8	K562	blood:

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs55824022	1.00[AMR][1000 genomes]
rs55824759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56149387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56202543	1.00[AMR][1000 genomes]
rs56210889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57264899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57322407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57378414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57405872	1.00[AMR][1000 genomes]
rs57944534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58096372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58676312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58973509	1.00[AMR][1000 genomes]
rs59373145	1.00[AMR][1000 genomes]
rs60534266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60572869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60706469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60971314	1.00[AMR][1000 genomes]
rs61191532	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61511418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61624419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740946	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740949	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740953	1.00[AMR][1000 genomes]
rs73740954	1.00[AMR][1000 genomes]
rs73742519	1.00[AMR][1000 genomes]
rs73742523	1.00[AMR][1000 genomes]
rs73742540	1.00[AMR][1000 genomes]
rs73742556	1.00[AMR][1000 genomes]
rs73742557	1.00[AMR][1000 genomes]
rs73743509	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28442000-28443400	Active TSS	K562	blood
2	chr6:28442200-28443400	Active TSS	H1 Cell Line	embryonic stem cell
3	chr6:28442200-28443400	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:28442200-28443400	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:28442200-28443400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:28442200-28443400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:28442400-28443400	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:28442400-28443400	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:28442400-28443400	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:28442400-28443400	Active TSS	A549	lung
11	chr6:28442400-28443600	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:28443200-28456600	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links