Variant report

Variant	rs58096372
Chromosome Location	chr6:28442763-28442764
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28422985..28425247-chr6:28440349..28442926,2	K562	blood:
2	chr6:28436210..28439439-chr6:28440893..28443830,3	K562	blood:
3	chr6:28441214..28445163-chr6:28446286..28449658,4	K562	blood:
4	chr6:28302344..28303875-chr6:28441340..28443590,2	K562	blood:
5	chr6:28440523..28445742-chr6:28446027..28449241,8	K562	blood:

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction
ENSG00000219262	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs55824022	1.00[AMR][1000 genomes]
rs55824759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56149387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56202543	1.00[AMR][1000 genomes]
rs56210889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57264899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57322407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57378414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57405872	1.00[AMR][1000 genomes]
rs57944534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58676312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58973509	1.00[AMR][1000 genomes]
rs59373145	1.00[AMR][1000 genomes]
rs60534266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60572869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60706469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60971314	1.00[AMR][1000 genomes]
rs61191532	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61511418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61624419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740946	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740949	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740953	1.00[AMR][1000 genomes]
rs73740954	1.00[AMR][1000 genomes]
rs73742519	1.00[AMR][1000 genomes]
rs73742523	1.00[AMR][1000 genomes]
rs73742540	1.00[AMR][1000 genomes]
rs73742556	1.00[AMR][1000 genomes]
rs73742557	1.00[AMR][1000 genomes]
rs73743509	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28442000-28443400	Active TSS	K562	blood
2	chr6:28442200-28442800	Bivalent/Poised TSS	HepG2	liver
3	chr6:28442200-28443000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:28442200-28443000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:28442200-28443000	Active TSS	Hela-S3	cervix
6	chr6:28442200-28443200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:28442200-28443200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:28442200-28443200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:28442200-28443200	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr6:28442200-28443200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:28442200-28443200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:28442200-28443200	Active TSS	GM12878-XiMat	blood
13	chr6:28442200-28443200	Active TSS	NHEK	skin
14	chr6:28442200-28443400	Active TSS	H1 Cell Line	embryonic stem cell
15	chr6:28442200-28443400	Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr6:28442200-28443400	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:28442200-28443400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:28442200-28443400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:28442400-28442800	Bivalent Enhancer	Primary T cells from cord blood	blood
20	chr6:28442400-28442800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
21	chr6:28442400-28442800	Bivalent/Poised TSS	Primary T killer memory cells from peripheral blood	blood
22	chr6:28442400-28442800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
23	chr6:28442400-28442800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:28442400-28442800	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr6:28442400-28442800	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr6:28442400-28442800	Active TSS	NH-A	brain
27	chr6:28442400-28443000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:28442400-28443000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:28442400-28443000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:28442400-28443000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:28442400-28443000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:28442400-28443000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:28442400-28443000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:28442400-28443000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:28442400-28443000	Active TSS	Brain Angular Gyrus	brain
36	chr6:28442400-28443000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
37	chr6:28442400-28443000	Active TSS	Brain Hippocampus Middle	brain
38	chr6:28442400-28443000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:28442400-28443000	Active TSS	Placenta	Placenta
40	chr6:28442400-28443000	Flanking Active TSS	HUVEC	blood vessel
41	chr6:28442400-28443000	Active TSS	NHDF-Ad	bronchial
42	chr6:28442400-28443200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
43	chr6:28442400-28443200	Active TSS	H9 Cell Line	embryonic stem cell
44	chr6:28442400-28443200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:28442400-28443200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:28442400-28443200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:28442400-28443200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:28442400-28443200	Active TSS	Muscle Satellite Cultured Cells	--
49	chr6:28442400-28443200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:28442400-28443200	Active TSS	Brain Anterior Caudate	brain

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