Variant report

Variant	rs57405872
Chromosome Location	chr6:28678238-28678239
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28675937..28678436-chr6:28714378..28717969,3	K562	blood:
2	chr6:28674230..28679862-chr6:28680075..28684685,7	K562	blood:
3	chr6:28677418..28680355-chr6:28735511..28738375,2	K562	blood:
4	chr6:28582176..28585131-chr6:28677473..28678993,2	K562	blood:
5	chr6:28676470..28679014-chr6:28887895..28890764,2	K562	blood:
6	chr6:28664889..28672891-chr6:28674189..28678694,12	K562	blood:
7	chr6:28676549..28680840-chr6:28724202..28726516,6	K562	blood:
8	chr6:28677880..28679993-chr6:28950394..28952978,2	K562	blood:
9	chr6:28659445..28664236-chr6:28674743..28678587,5	K562	blood:
10	chr6:27870121..27872000-chr6:28676419..28679069,2	K562	blood:
11	chr6:28677024..28680294-chr6:28708371..28711108,3	K562	blood:
12	chr6:28677491..28679930-chr6:28756497..28758578,2	K562	blood:
13	chr6:28676549..28680032-chr6:28724574..28727425,3	K562	blood:
14	chr6:28673080..28675380-chr6:28676170..28678591,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000204713	Chromatin interaction
ENSG00000232040	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55824022	1.00[AMR][1000 genomes]
rs56068951	1.00[AMR][1000 genomes]
rs56210889	1.00[AMR][1000 genomes]
rs56896363	1.00[AMR][1000 genomes]
rs57944534	1.00[AMR][1000 genomes]
rs58096372	1.00[AMR][1000 genomes]
rs58951491	1.00[AMR][1000 genomes]
rs59014987	1.00[AMR][1000 genomes]
rs59081144	1.00[AMR][1000 genomes]
rs59154594	1.00[AMR][1000 genomes]
rs59373145	1.00[AMR][1000 genomes]
rs59899949	1.00[AMR][1000 genomes]
rs73740944	1.00[AMR][1000 genomes]
rs73740945	1.00[AMR][1000 genomes]
rs73740946	1.00[AMR][1000 genomes]
rs73740947	1.00[AMR][1000 genomes]
rs73740948	1.00[AMR][1000 genomes]
rs73740949	1.00[AMR][1000 genomes]
rs73740950	1.00[AMR][1000 genomes]
rs73740951	1.00[AMR][1000 genomes]
rs73740953	1.00[AMR][1000 genomes]
rs73740954	1.00[AMR][1000 genomes]
rs73741204	1.00[AMR][1000 genomes]
rs73741206	1.00[AMR][1000 genomes]
rs73741208	1.00[AMR][1000 genomes]
rs73741211	1.00[AMR][1000 genomes]
rs73741403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741408	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741411	1.00[AMR][1000 genomes]
rs73741414	1.00[AMR][1000 genomes]
rs73741415	1.00[AMR][1000 genomes]
rs73741417	1.00[AMR][1000 genomes]
rs73743509	1.00[AMR][1000 genomes]
rs73744145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744509	1.00[AMR][1000 genomes]
rs73744512	1.00[AMR][1000 genomes]
rs73744513	1.00[AMR][1000 genomes]
rs73744514	1.00[AMR][1000 genomes]
rs73744515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28676400-28678400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:28676400-28678600	Active TSS	H9 Cell Line	embryonic stem cell
3	chr6:28676400-28678600	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr6:28676400-28678600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:28676400-28678600	Active TSS	A549	lung
6	chr6:28676400-28678800	Active TSS	H1 Cell Line	embryonic stem cell
7	chr6:28676400-28678800	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr6:28676600-28678400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:28676600-28678400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:28676600-28678400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:28676600-28678600	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr6:28676600-28678600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
13	chr6:28676600-28678600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:28676600-28678800	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr6:28676800-28678400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:28676800-28678400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:28676800-28678400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:28677000-28678400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:28677000-28678400	Flanking Active TSS	NHEK	skin
20	chr6:28677800-28678400	Active TSS	HSMMtube	muscle
21	chr6:28677800-28680000	Weak transcription	HMEC	breast
22	chr6:28678000-28678400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:28678000-28679400	Flanking Active TSS	K562	blood
24	chr6:28678200-28678600	Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr6:28678200-28678600	Flanking Active TSS	HepG2	liver
26	chr6:28678200-28678800	Active TSS	iPS-20b Cell Line	embryonic stem cell

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