Variant report

Variant	rs73741408
Chromosome Location	chr6:28706354-28706355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28705003..28707799-chr6:28889865..28891695,2	K562	blood:
2	chr6:28694465..28699409-chr6:28701823..28706376,12	K562	blood:
3	chr6:28704284..28707045-chr6:28723983..28725942,2	MCF-7	breast:
4	chr6:28706088..28707933-chr6:28709707..28711699,2	MCF-7	breast:
5	chr6:28705580..28707892-chr6:28755666..28757274,2	K562	blood:
6	chr6:28705520..28707079-chr6:28973043..28974669,2	K562	blood:
7	chr6:28704393..28708100-chr6:28724005..28727294,4	K562	blood:

Variant related genes	Relation type
ENSG00000197935	Chromatin interaction
ENSG00000204713	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs55824022	1.00[AMR][1000 genomes]
rs56068951	1.00[AMR][1000 genomes]
rs56896363	1.00[AMR][1000 genomes]
rs57405872	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58951491	1.00[AMR][1000 genomes]
rs59014987	1.00[AMR][1000 genomes]
rs59081144	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59154594	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899949	1.00[AMR][1000 genomes]
rs73741204	1.00[AMR][1000 genomes]
rs73741206	1.00[AMR][1000 genomes]
rs73741208	1.00[AMR][1000 genomes]
rs73741211	1.00[AMR][1000 genomes]
rs73741403	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741411	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741414	1.00[AMR][1000 genomes]
rs73741415	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741417	1.00[AMR][1000 genomes]
rs73743509	1.00[AMR][1000 genomes]
rs73744145	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744509	1.00[AMR][1000 genomes]
rs73744512	1.00[AMR][1000 genomes]
rs73744513	1.00[AMR][1000 genomes]
rs73744514	1.00[AMR][1000 genomes]
rs73744515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28705000-28707200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
2	chr6:28705200-28706800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:28705200-28706800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
4	chr6:28705200-28706800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr6:28705200-28707000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
6	chr6:28705200-28707000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
7	chr6:28705200-28707000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:28705200-28707000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:28705400-28706600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:28705400-28706800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:28705400-28707000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:28705400-28707000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
13	chr6:28705400-28707000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:28705600-28710400	Weak transcription	A549	lung
15	chr6:28705800-28706600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:28705800-28706600	ZNF genes & repeats	GM12878-XiMat	blood
17	chr6:28705800-28706800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr6:28705800-28707000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:28705800-28707000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
20	chr6:28706000-28706600	Flanking Bivalent TSS/Enh	NHEK	skin
21	chr6:28706000-28706800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:28706000-28707000	Flanking Active TSS	HMEC	breast
23	chr6:28706000-28707000	Flanking Active TSS	K562	blood
24	chr6:28706200-28706400	Bivalent Enhancer	Brain Hippocampus Middle	brain
25	chr6:28706200-28706400	Bivalent Enhancer	HepG2	liver
26	chr6:28706200-28706600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:28706200-28706600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr6:28706200-28706600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin

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