Variant report

Variant	rs73744509
Chromosome Location	chr6:28772668-28772669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28770520..28773672-chr6:28829844..28832870,3	K562	blood:
2	chr6:28771451..28773263-chr6:28777101..28779175,2	K562	blood:
3	chr6:28770558..28773254-chr6:28806737..28808772,2	K562	blood:
4	chr6:28760359..28764219-chr6:28771578..28776179,5	K562	blood:
5	chr6:28771461..28773672-chr6:28829844..28832711,2	K562	blood:
6	chr6:28772556..28774593-chr6:28785044..28786627,2	K562	blood:

Variant related genes	Relation type
ENSG00000265764	Chromatin interaction
ENSG00000225595	Chromatin interaction
ENSG00000225173	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs55824022	1.00[AMR][1000 genomes]
rs56068951	1.00[AMR][1000 genomes]
rs56896363	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57405872	1.00[AMR][1000 genomes]
rs58951491	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59014987	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59081144	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59154594	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899949	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741204	1.00[AMR][1000 genomes]
rs73741206	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741208	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741211	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741403	1.00[AMR][1000 genomes]
rs73741408	1.00[AMR][1000 genomes]
rs73741411	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741414	1.00[AMR][1000 genomes]
rs73741415	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741417	1.00[AMR][1000 genomes]
rs73741899	1.00[AMR][1000 genomes]
rs73744145	1.00[AMR][1000 genomes]
rs73744512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744513	1.00[AMR][1000 genomes]
rs73744514	1.00[AMR][1000 genomes]
rs73744515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2322180	chr6:28764675-28780578	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv9558	chr6:28770281-28785058	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3410540	chr6:28770455-28785112	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3322630	chr6:28770519-28785092	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv3486939	chr6:28770525-28785051	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv3486940	chr6:28770525-28785051	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv3403106	chr6:28770790-28785189	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28771400-28775800	Weak transcription	GM12878-XiMat	blood
2	chr6:28771800-28775600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:28772200-28775600	Weak transcription	Hela-S3	cervix
4	chr6:28772400-28772800	Enhancers	A549	lung
5	chr6:28772400-28775600	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links