Variant report

Variant	rs73741417
Chromosome Location	chr6:28769506-28769507
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28769403..28772112-chr6:28910261..28912768,2	K562	blood:
2	chr6:28761012..28764011-chr6:28768099..28770643,2	K562	blood:
3	chr6:28768996..28771268-chr6:28774440..28778213,3	K562	blood:
4	chr6:28761080..28764011-chr6:28767880..28769599,2	K562	blood:

Variant related genes	Relation type
ENSG00000265764	Chromatin interaction
ENSG00000204709	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55824022	1.00[AMR][1000 genomes]
rs56068951	1.00[AMR][1000 genomes]
rs56896363	1.00[AMR][1000 genomes]
rs57405872	1.00[AMR][1000 genomes]
rs58951491	1.00[AMR][1000 genomes]
rs59014987	1.00[AMR][1000 genomes]
rs59081144	1.00[AMR][1000 genomes]
rs59154594	1.00[AMR][1000 genomes]
rs59899949	1.00[AMR][1000 genomes]
rs73741204	1.00[AMR][1000 genomes]
rs73741206	1.00[AMR][1000 genomes]
rs73741208	1.00[AMR][1000 genomes]
rs73741211	1.00[AMR][1000 genomes]
rs73741403	1.00[AMR][1000 genomes]
rs73741408	1.00[AMR][1000 genomes]
rs73741411	1.00[AMR][1000 genomes]
rs73741414	1.00[AMR][1000 genomes]
rs73741415	1.00[AMR][1000 genomes]
rs73741899	1.00[AMR][1000 genomes]
rs73743509	1.00[AMR][1000 genomes]
rs73744145	1.00[AMR][1000 genomes]
rs73744509	1.00[AMR][1000 genomes]
rs73744512	1.00[AMR][1000 genomes]
rs73744513	1.00[AMR][1000 genomes]
rs73744514	1.00[AMR][1000 genomes]
rs73744515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2322180	chr6:28764675-28780578	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28763400-28770600	Weak transcription	HMEC	breast
2	chr6:28764600-28770400	Weak transcription	GM12878-XiMat	blood
3	chr6:28765000-28769600	Weak transcription	K562	blood

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