Variant report

Variant	rs59081144
Chromosome Location	chr6:28764417-28764418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55824022	1.00[AMR][1000 genomes]
rs56068951	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56896363	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57405872	1.00[AMR][1000 genomes]
rs58951491	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59014987	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59154594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741204	1.00[AMR][1000 genomes]
rs73741206	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741208	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741211	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741403	1.00[AMR][1000 genomes]
rs73741408	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741414	1.00[AMR][1000 genomes]
rs73741415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741417	1.00[AMR][1000 genomes]
rs73741899	1.00[AMR][1000 genomes]
rs73743509	1.00[AMR][1000 genomes]
rs73744145	1.00[AMR][1000 genomes]
rs73744509	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744512	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744513	1.00[AMR][1000 genomes]
rs73744514	1.00[AMR][1000 genomes]
rs73744515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28761600-28764600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr6:28763400-28764800	Active TSS	A549	lung
3	chr6:28763400-28770600	Weak transcription	HMEC	breast
4	chr6:28763600-28764600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:28763600-28764600	Enhancers	GM12878-XiMat	blood
6	chr6:28763600-28765000	Active TSS	K562	blood
7	chr6:28763800-28764600	Active TSS	H9 Cell Line	embryonic stem cell
8	chr6:28763800-28764600	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:28763800-28764600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:28764000-28764600	Active TSS	H1 Cell Line	embryonic stem cell
11	chr6:28764000-28764600	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr6:28764200-28764600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:28764200-28764600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:28764200-28764600	Flanking Active TSS	Hela-S3	cervix
15	chr6:28764200-28765400	Enhancers	HepG2	liver
16	chr6:28764400-28764600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
17	chr6:28764400-28764600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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