Variant report
| Variant | rs73741403 |
|---|---|
| Chromosome Location | chr6:28689304-28689305 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:20)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:20 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28686790..28690321-chr6:28972014..28975051,3 | K562 | blood: | |
| 2 | chr6:28688964..28691307-chr6:28783200..28785150,2 | K562 | blood: | |
| 3 | chr6:28688275..28691006-chr6:28830286..28833046,2 | K562 | blood: | |
| 4 | chr6:28688047..28690834-chr6:28847432..28849865,2 | K562 | blood: | |
| 5 | chr6:28687184..28689466-chr6:28889833..28891936,2 | K562 | blood: | |
| 6 | chr6:28682762..28689665-chr6:28860684..28866524,9 | K562 | blood: | |
| 7 | chr6:28685695..28690739-chr6:28709794..28719692,17 | K562 | blood: | |
| 8 | chr6:28685640..28691299-chr6:28719887..28724041,7 | K562 | blood: | |
| 9 | chr6:28688164..28689744-chr6:28726401..28728148,2 | K562 | blood: | |
| 10 | chr6:28687184..28690282-chr6:28725684..28728661,4 | K562 | blood: | |
| 11 | chr6:28686780..28689583-chr6:28731850..28734136,2 | K562 | blood: | |
| 12 | chr6:28687492..28689983-chr6:28961733..28963921,2 | K562 | blood: | |
| 13 | chr6:28687246..28689887-chr6:28948960..28952398,3 | K562 | blood: | |
| 14 | chr6:27797995..27799606-chr6:28688387..28690532,2 | K562 | blood: | |
| 15 | chr6:28579298..28581830-chr6:28687615..28690190,2 | K562 | blood: | |
| 16 | chr6:27804984..27807620-chr6:28688259..28689782,2 | K562 | blood: | |
| 17 | chr6:28689073..28690596-chr6:28736279..28738758,2 | K562 | blood: | |
| 18 | chr6:28579345..28581830-chr6:28688286..28691469,3 | K562 | blood: | |
| 19 | chr6:28687938..28689790-chr6:28777726..28779382,2 | K562 | blood: | |
| 20 | chr6:28655903..28659289-chr6:28687482..28691877,5 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000225595 | Chromatin interaction |
| ENSG00000224157 | Chromatin interaction |
| ENSG00000233822 | Chromatin interaction |
| ENSG00000197935 | Chromatin interaction |
| ENSG00000184348 | Chromatin interaction |
| ENSG00000197914 | Chromatin interaction |
| ENSG00000204713 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs55824022 | 1.00[AMR][1000 genomes] |
| rs56068951 | 1.00[AMR][1000 genomes] |
| rs56896363 | 1.00[AMR][1000 genomes] |
| rs57405872 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58951491 | 1.00[AMR][1000 genomes] |
| rs59014987 | 1.00[AMR][1000 genomes] |
| rs59081144 | 1.00[AMR][1000 genomes] |
| rs59154594 | 1.00[AMR][1000 genomes] |
| rs59373145 | 1.00[AMR][1000 genomes] |
| rs59899949 | 1.00[AMR][1000 genomes] |
| rs73740954 | 1.00[AMR][1000 genomes] |
| rs73741204 | 1.00[AMR][1000 genomes] |
| rs73741206 | 1.00[AMR][1000 genomes] |
| rs73741208 | 1.00[AMR][1000 genomes] |
| rs73741211 | 1.00[AMR][1000 genomes] |
| rs73741408 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73741411 | 1.00[AMR][1000 genomes] |
| rs73741414 | 1.00[AMR][1000 genomes] |
| rs73741415 | 1.00[AMR][1000 genomes] |
| rs73741417 | 1.00[AMR][1000 genomes] |
| rs73743509 | 1.00[AMR][1000 genomes] |
| rs73744145 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73744509 | 1.00[AMR][1000 genomes] |
| rs73744512 | 1.00[AMR][1000 genomes] |
| rs73744513 | 1.00[AMR][1000 genomes] |
| rs73744514 | 1.00[AMR][1000 genomes] |
| rs73744515 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534089 | chr6:28636972-28841640 | Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28688800-28689400 | Enhancers | K562 | blood |
| 2 | chr6:28689000-28689800 | Enhancers | HepG2 | liver |
