Variant report

Variant	rs73741414
Chromosome Location	chr6:28736923-28736924
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28689073..28690596-chr6:28736279..28738758,2	K562	blood:
2	chr6:28731767..28734753-chr6:28735144..28738101,4	K562	blood:
3	chr6:28555206..28557867-chr6:28736797..28739499,2	K562	blood:
4	chr6:28734776..28737188-chr6:28758091..28759724,2	K562	blood:
5	chr6:28731785..28733596-chr6:28736349..28738667,2	K562	blood:
6	chr6:28723896..28728359-chr6:28734827..28738855,4	K562	blood:
7	chr6:28723896..28728359-chr6:28734827..28738855,6	K562	blood:
8	chr6:28677418..28680355-chr6:28735511..28738375,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55824022	1.00[AMR][1000 genomes]
rs56068951	1.00[AMR][1000 genomes]
rs56896363	1.00[AMR][1000 genomes]
rs57405872	1.00[AMR][1000 genomes]
rs58951491	1.00[AMR][1000 genomes]
rs59014987	1.00[AMR][1000 genomes]
rs59081144	1.00[AMR][1000 genomes]
rs59154594	1.00[AMR][1000 genomes]
rs59899949	1.00[AMR][1000 genomes]
rs73741204	1.00[AMR][1000 genomes]
rs73741206	1.00[AMR][1000 genomes]
rs73741208	1.00[AMR][1000 genomes]
rs73741211	1.00[AMR][1000 genomes]
rs73741403	1.00[AMR][1000 genomes]
rs73741408	1.00[AMR][1000 genomes]
rs73741411	1.00[AMR][1000 genomes]
rs73741415	1.00[AMR][1000 genomes]
rs73741417	1.00[AMR][1000 genomes]
rs73741899	1.00[AMR][1000 genomes]
rs73743509	1.00[AMR][1000 genomes]
rs73744145	1.00[AMR][1000 genomes]
rs73744509	1.00[AMR][1000 genomes]
rs73744512	1.00[AMR][1000 genomes]
rs73744513	1.00[AMR][1000 genomes]
rs73744514	1.00[AMR][1000 genomes]
rs73744515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28733600-28740800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28735400-28737400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
3	chr6:28735400-28738600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:28735600-28737200	Weak transcription	K562	blood
5	chr6:28736200-28737200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr6:28736200-28737400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr6:28736600-28737000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr6:28736600-28737800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr6:28736600-28738000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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