Variant report

Variant	rs73744512
Chromosome Location	chr6:28785730-28785731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28774872..28779186-chr6:28780865..28786550,9	K562	blood:
2	chr6:28722382..28724843-chr6:28784005..28786428,2	K562	blood:
3	chr6:28772556..28774593-chr6:28785044..28786627,2	K562	blood:
4	chr6:28722382..28725655-chr6:28783034..28786428,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs56068951	1.00[AMR][1000 genomes]
rs56896363	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57405872	1.00[AMR][1000 genomes]
rs58951491	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59014987	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59081144	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59154594	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899949	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741204	1.00[AMR][1000 genomes]
rs73741206	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741208	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741211	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741403	1.00[AMR][1000 genomes]
rs73741408	1.00[AMR][1000 genomes]
rs73741411	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741414	1.00[AMR][1000 genomes]
rs73741415	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741417	1.00[AMR][1000 genomes]
rs73741899	1.00[AMR][1000 genomes]
rs73744145	1.00[AMR][1000 genomes]
rs73744509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744513	1.00[AMR][1000 genomes]
rs73744514	1.00[AMR][1000 genomes]
rs73744515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28784200-28786000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr6:28784200-28786200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:28784400-28785800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
4	chr6:28784400-28785800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:28784400-28786000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
6	chr6:28784400-28786000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:28784400-28786000	Active TSS	A549	lung
8	chr6:28784600-28785800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:28784600-28785800	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:28784600-28785800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:28784600-28785800	Active TSS	HMEC	breast
12	chr6:28784600-28786000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:28784800-28785800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:28785000-28785800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
15	chr6:28785000-28785800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:28785000-28785800	Flanking Active TSS	HepG2	liver
17	chr6:28785000-28785800	Active TSS	K562	blood
18	chr6:28785000-28786000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr6:28785400-28786000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
20	chr6:28785600-28785800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:28785600-28785800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
22	chr6:28785600-28785800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:28785600-28785800	Bivalent/Poised TSS	NHEK	skin
24	chr6:28785600-28786000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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