Variant report
| Variant | rs73744514 |
|---|---|
| Chromosome Location | chr6:28810046-28810047 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28808316..28811196-chr6:28890836..28893295,2 | MCF-7 | breast: | |
| 2 | chr6:28806394..28809011-chr6:28809374..28811092,3 | K562 | blood: | |
| 3 | chr6:28805049..28806796-chr6:28807543..28810088,2 | MCF-7 | breast: | |
| 4 | chr6:28802089..28805031-chr6:28809427..28811386,2 | K562 | blood: | |
| 5 | chr6:28809293..28810970-chr6:28814683..28816407,2 | MCF-7 | breast: | |
| 6 | chr6:28805205..28806782-chr6:28809772..28812614,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000204713 | Chromatin interaction |
| ENSG00000225173 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs56068951 | 1.00[AMR][1000 genomes] |
| rs56896363 | 1.00[AMR][1000 genomes] |
| rs57405872 | 1.00[AMR][1000 genomes] |
| rs58951491 | 1.00[AMR][1000 genomes] |
| rs59014987 | 1.00[AMR][1000 genomes] |
| rs59081144 | 1.00[AMR][1000 genomes] |
| rs59154594 | 1.00[AMR][1000 genomes] |
| rs59899949 | 1.00[AMR][1000 genomes] |
| rs73741204 | 1.00[AMR][1000 genomes] |
| rs73741206 | 1.00[AMR][1000 genomes] |
| rs73741208 | 1.00[AMR][1000 genomes] |
| rs73741211 | 1.00[AMR][1000 genomes] |
| rs73741403 | 1.00[AMR][1000 genomes] |
| rs73741408 | 1.00[AMR][1000 genomes] |
| rs73741411 | 1.00[AMR][1000 genomes] |
| rs73741414 | 1.00[AMR][1000 genomes] |
| rs73741415 | 1.00[AMR][1000 genomes] |
| rs73741417 | 1.00[AMR][1000 genomes] |
| rs73741899 | 1.00[AMR][1000 genomes] |
| rs73744145 | 1.00[AMR][1000 genomes] |
| rs73744509 | 1.00[AMR][1000 genomes] |
| rs73744512 | 1.00[AMR][1000 genomes] |
| rs73744513 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73744515 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534089 | chr6:28636972-28841640 | Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv883518 | chr6:28792477-28911802 | Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 56 gene(s) | inside rSNPs | diseases |
| 3 | nsv883519 | chr6:28792477-28936556 | Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 57 gene(s) | inside rSNPs | diseases |
| 4 | esv3403240 | chr6:28808022-28832799 | Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
