Variant report

Variant	rs73741899
Chromosome Location	chr6:28906819-28906820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000227214	Chromatin interaction
ENSG00000204713	Chromatin interaction
ENSG00000224157	Chromatin interaction
ENSG00000263426	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56896363	1.00[AMR][1000 genomes]
rs58951491	1.00[AMR][1000 genomes]
rs59014987	1.00[AMR][1000 genomes]
rs59081144	1.00[AMR][1000 genomes]
rs59154594	1.00[AMR][1000 genomes]
rs59899949	1.00[AMR][1000 genomes]
rs73741204	1.00[AMR][1000 genomes]
rs73741206	1.00[AMR][1000 genomes]
rs73741208	1.00[AMR][1000 genomes]
rs73741211	1.00[AMR][1000 genomes]
rs73741414	1.00[AMR][1000 genomes]
rs73741415	1.00[AMR][1000 genomes]
rs73741417	1.00[AMR][1000 genomes]
rs73744509	1.00[AMR][1000 genomes]
rs73744512	1.00[AMR][1000 genomes]
rs73744513	1.00[AMR][1000 genomes]
rs73744514	1.00[AMR][1000 genomes]
rs73744515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
2	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
3	nsv427748	chr6:28831888-28999434	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv830622	chr6:28861667-29015804	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28903000-28907200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:28903000-28907600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:28903200-28907200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:28903800-28907200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:28904600-28907800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:28905200-28907800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:28905200-28907800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:28905200-28907800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:28905200-28907800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr6:28905400-28907800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:28905400-28907800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:28905600-28907800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:28906600-28907200	Enhancers	K562	blood
14	chr6:28906600-28907400	Flanking Active TSS	HepG2	liver
15	chr6:28906600-28912600	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr6:28906800-28907200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:28906800-28907200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:28906800-28907800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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