Variant report

Variant	rs73741415
Chromosome Location	chr6:28738691-28738692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55824022	1.00[AMR][1000 genomes]
rs56068951	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56896363	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57405872	1.00[AMR][1000 genomes]
rs58951491	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59014987	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59081144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59154594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741204	1.00[AMR][1000 genomes]
rs73741206	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741208	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741211	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741403	1.00[AMR][1000 genomes]
rs73741408	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741414	1.00[AMR][1000 genomes]
rs73741417	1.00[AMR][1000 genomes]
rs73741899	1.00[AMR][1000 genomes]
rs73743509	1.00[AMR][1000 genomes]
rs73744145	1.00[AMR][1000 genomes]
rs73744509	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744512	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744513	1.00[AMR][1000 genomes]
rs73744514	1.00[AMR][1000 genomes]
rs73744515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28733600-28740800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28737200-28739600	Enhancers	K562	blood
3	chr6:28738200-28739200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:28738200-28740800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr6:28738400-28739600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr6:28738400-28739600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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