Variant report

Variant	rs73741411
Chromosome Location	chr6:28721913-28721914
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28719866..28722717-chr6:28750909..28752820,2	K562	blood:
2	chr6:28701813..28704465-chr6:28720205..28723280,3	K562	blood:
3	chr6:28695559..28699343-chr6:28721391..28727067,6	K562	blood:
4	chr6:28715243..28717665-chr6:28720660..28723020,3	MCF-7	breast:
5	chr6:27859657..27862433-chr6:28721002..28723229,2	K562	blood:
6	chr6:28685640..28691299-chr6:28719887..28724041,7	K562	blood:
7	chr6:28721787..28724398-chr9:131939083..131940744,2	MCF-7	breast:
8	chr6:28720936..28723199-chr6:28731913..28733640,2	K562	blood:
9	chr6:28721780..28723340-chr6:28835346..28836933,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000188483	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000235559	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs55824022	1.00[AMR][1000 genomes]
rs56068951	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56896363	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57405872	1.00[AMR][1000 genomes]
rs58951491	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59014987	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59081144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59154594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741204	1.00[AMR][1000 genomes]
rs73741206	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741208	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741211	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741403	1.00[AMR][1000 genomes]
rs73741408	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741414	1.00[AMR][1000 genomes]
rs73741415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741417	1.00[AMR][1000 genomes]
rs73743509	1.00[AMR][1000 genomes]
rs73744145	1.00[AMR][1000 genomes]
rs73744509	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744512	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744513	1.00[AMR][1000 genomes]
rs73744514	1.00[AMR][1000 genomes]
rs73744515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28715400-28725000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:28715600-28724800	Weak transcription	HMEC	breast
3	chr6:28718800-28724600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:28719800-28722400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:28721000-28723800	Weak transcription	A549	lung
6	chr6:28721000-28723800	Weak transcription	Hela-S3	cervix
7	chr6:28721800-28723200	Flanking Active TSS	K562	blood
8	chr6:28721800-28724000	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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