Variant report

Variant	rs58951491
Chromosome Location	chr6:28836666-28836667
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:28836582-28836926	K562	blood:	n/a	n/a
2	MAX	chr6:28836650-28836889	K562	blood:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28803282..28808663-chr6:28829877..28836776,13	K562	blood:
2	chr6:28835176..28837889-chr6:28857457..28859067,2	K562	blood:
3	chr6:28834360..28837411-chr6:28839003..28841254,4	K562	blood:
4	chr6:28833478..28838269-chr6:28843234..28846516,6	MCF-7	breast:
5	chr6:28835058..28836917-chr6:28845496..28848053,2	MCF-7	breast:
6	chr6:28828478..28839935-chr6:28855092..28866386,31	K562	blood:
7	chr6:28833354..28837219-chr6:28837839..28842041,5	MCF-7	breast:
8	chr6:28831130..28836886-chr6:28890033..28892870,9	MCF-7	breast:
9	chr6:28721780..28723340-chr6:28835346..28836933,2	K562	blood:
10	chr6:28834738..28837746-chr6:28847549..28850161,3	K562	blood:
11	chr6:28836034..28838207-chr6:28888202..28890535,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000225595	TF binding region
ENSG00000225173	Chromatin interaction
ENSG00000224157	Chromatin interaction
ENSG00000204713	Chromatin interaction
ENSG00000233366	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs56068951	1.00[AMR][1000 genomes]
rs56896363	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57405872	1.00[AMR][1000 genomes]
rs59014987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59081144	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59154594	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61534351	0.82[AFR][1000 genomes]
rs73741204	1.00[AMR][1000 genomes]
rs73741206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741403	1.00[AMR][1000 genomes]
rs73741408	1.00[AMR][1000 genomes]
rs73741411	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741414	1.00[AMR][1000 genomes]
rs73741415	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741417	1.00[AMR][1000 genomes]
rs73741899	1.00[AMR][1000 genomes]
rs73744145	1.00[AMR][1000 genomes]
rs73744509	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744512	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73744513	1.00[AMR][1000 genomes]
rs73744514	1.00[AMR][1000 genomes]
rs73744515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
3	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
4	nsv427748	chr6:28831888-28999434	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
5	nsv601212	chr6:28833225-28893927	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	nsv462667	chr6:28834646-28893927	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28835000-28837000	Enhancers	Fetal Thymus	thymus
2	chr6:28835200-28837000	Enhancers	K562	blood
3	chr6:28835200-28837400	Weak transcription	Thymus	Thymus
4	chr6:28835800-28839000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:28836000-28839600	Weak transcription	HepG2	liver

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