Variant report
| Variant | rs73744145 |
|---|---|
| Chromosome Location | chr6:28682410-28682411 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28674230..28679862-chr6:28680075..28684685,7 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs55824022 | 1.00[AMR][1000 genomes] |
| rs56068951 | 1.00[AMR][1000 genomes] |
| rs56896363 | 1.00[AMR][1000 genomes] |
| rs57405872 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57944534 | 1.00[AMR][1000 genomes] |
| rs58951491 | 1.00[AMR][1000 genomes] |
| rs59014987 | 1.00[AMR][1000 genomes] |
| rs59081144 | 1.00[AMR][1000 genomes] |
| rs59154594 | 1.00[AMR][1000 genomes] |
| rs59373145 | 1.00[AMR][1000 genomes] |
| rs59899949 | 1.00[AMR][1000 genomes] |
| rs73740950 | 1.00[AMR][1000 genomes] |
| rs73740951 | 1.00[AMR][1000 genomes] |
| rs73740953 | 1.00[AMR][1000 genomes] |
| rs73740954 | 1.00[AMR][1000 genomes] |
| rs73741204 | 1.00[AMR][1000 genomes] |
| rs73741206 | 1.00[AMR][1000 genomes] |
| rs73741208 | 1.00[AMR][1000 genomes] |
| rs73741211 | 1.00[AMR][1000 genomes] |
| rs73741403 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73741408 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73741411 | 1.00[AMR][1000 genomes] |
| rs73741414 | 1.00[AMR][1000 genomes] |
| rs73741415 | 1.00[AMR][1000 genomes] |
| rs73741417 | 1.00[AMR][1000 genomes] |
| rs73743509 | 1.00[AMR][1000 genomes] |
| rs73744509 | 1.00[AMR][1000 genomes] |
| rs73744512 | 1.00[AMR][1000 genomes] |
| rs73744513 | 1.00[AMR][1000 genomes] |
| rs73744514 | 1.00[AMR][1000 genomes] |
| rs73744515 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534089 | chr6:28636972-28841640 | Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28680200-28684400 | Weak transcription | K562 | blood |
