Variant report

Variant	rs73740946
Chromosome Location	chr6:28444599-28444600
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28364005..28367844-chr6:28444304..28449588,6	K562	blood:
2	chr6:28439833..28442457-chr6:28444087..28445885,2	K562	blood:
3	chr6:28105533..28107833-chr6:28443278..28445327,2	MCF-7	breast:
4	chr6:28441214..28445163-chr6:28446286..28449658,4	K562	blood:
5	chr6:28440523..28445742-chr6:28446027..28449241,8	K562	blood:

Variant related genes	Relation type
ENSG00000158691	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs55824022	1.00[AMR][1000 genomes]
rs55824759	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56149387	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56202543	1.00[AMR][1000 genomes]
rs56210889	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57264899	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57322407	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57378414	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57405872	1.00[AMR][1000 genomes]
rs57944534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58096372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58676312	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58973509	1.00[AMR][1000 genomes]
rs59373145	1.00[AMR][1000 genomes]
rs60534266	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60572869	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60706469	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60971314	1.00[AMR][1000 genomes]
rs61191532	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61511418	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61624419	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740616	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740627	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740630	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740631	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740633	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740635	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740637	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740939	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740941	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740942	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740943	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740944	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740945	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740947	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740948	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740949	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740953	1.00[AMR][1000 genomes]
rs73740954	1.00[AMR][1000 genomes]
rs73742519	1.00[AMR][1000 genomes]
rs73742523	1.00[AMR][1000 genomes]
rs73742540	1.00[AMR][1000 genomes]
rs73742556	1.00[AMR][1000 genomes]
rs73742557	1.00[AMR][1000 genomes]
rs73743509	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28443200-28456600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:28443400-28446400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:28443400-28447800	Weak transcription	K562	blood

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