Variant report

Variant	rs60661930
Chromosome Location	chr5:74313554-74313555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10462510	0.84[ASN][1000 genomes]
rs12515891	0.86[ASN][1000 genomes]
rs4492095	0.93[ASN][1000 genomes]
rs4704166	0.88[ASN][1000 genomes]
rs58243356	0.95[ASN][1000 genomes]
rs58323964	0.84[ASN][1000 genomes]
rs59992473	0.95[ASN][1000 genomes]
rs61342638	0.85[ASN][1000 genomes]
rs61616736	0.99[ASN][1000 genomes]
rs62369160	0.82[ASN][1000 genomes]
rs62369161	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62369163	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62369166	0.80[ASN][1000 genomes]
rs62369167	0.81[ASN][1000 genomes]
rs62369187	0.81[ASN][1000 genomes]
rs6874469	0.83[ASN][1000 genomes]
rs72768311	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7706858	0.95[ASN][1000 genomes]
rs7736471	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74303600-74316000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:74312600-74313800	Enhancers	NHDF-Ad	bronchial
3	chr5:74312800-74313600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:74313000-74313800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:74313200-74313600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:74313400-74313600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:74313400-74314600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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