Variant report
| Variant | rs62369166 |
|---|---|
| Chromosome Location | chr5:74311162-74311163 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11957690 | 0.84[EUR][1000 genomes] |
| rs12516438 | 0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12651778 | 0.86[ASN][1000 genomes] |
| rs12657763 | 0.86[ASN][1000 genomes] |
| rs34018438 | 0.86[EUR][1000 genomes] |
| rs3811986 | 0.84[EUR][1000 genomes] |
| rs3811987 | 0.84[EUR][1000 genomes] |
| rs4285200 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4290996 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4492095 | 0.82[EUR][1000 genomes] |
| rs4704166 | 0.84[EUR][1000 genomes] |
| rs56682994 | 0.84[EUR][1000 genomes] |
| rs58243356 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs59923116 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs59992473 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs60661930 | 0.80[ASN][1000 genomes] |
| rs61616736 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62369160 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs62369161 | 0.98[ASN][1000 genomes] |
| rs62369162 | 0.90[ASN][1000 genomes] |
| rs62369163 | 0.95[ASN][1000 genomes] |
| rs62369164 | 0.91[EUR][1000 genomes] |
| rs62369167 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6874469 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72768311 | 0.83[ASN][1000 genomes] |
| rs7706858 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7725085 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7726378 | 0.80[EUR][1000 genomes] |
| rs7734427 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830352 | chr5:74189495-74337944 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018865 | chr5:74246293-74494552 | Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:74303600-74316000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
