Variant report

Variant	rs7734427
Chromosome Location	chr5:74328068-74328069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11957690	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12516438	0.85[EUR][1000 genomes]
rs34018438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3811986	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811987	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4285200	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs4290996	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs4492095	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4704166	1.00[CEU][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56682994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58243356	0.88[EUR][1000 genomes]
rs59923116	0.85[EUR][1000 genomes]
rs59992473	0.86[EUR][1000 genomes]
rs61616736	0.92[EUR][1000 genomes]
rs62369160	0.89[EUR][1000 genomes]
rs62369164	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62369166	0.84[EUR][1000 genomes]
rs62369167	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6874469	0.89[EUR][1000 genomes]
rs7706858	0.93[EUR][1000 genomes]
rs7725085	0.88[EUR][1000 genomes]
rs7726378	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv969994	chr5:74314591-74330479	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74313600-74341800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:74315200-74332800	Weak transcription	NHDF-Ad	bronchial
3	chr5:74316400-74328200	Weak transcription	Placenta	Placenta
4	chr5:74316400-74330200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:74317200-74331400	Weak transcription	Fetal Intestine Large	intestine
6	chr5:74317600-74344200	Weak transcription	Ovary	ovary
7	chr5:74317800-74332600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:74319800-74330000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:74319800-74330200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:74320200-74329800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:74320400-74329000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:74320400-74329200	Weak transcription	Stomach Mucosa	stomach
13	chr5:74320400-74332600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:74320800-74329000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr5:74322800-74334400	Weak transcription	Aorta	Aorta
16	chr5:74323800-74330000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr5:74324000-74332400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:74324400-74333600	Strong transcription	Thymus	Thymus
19	chr5:74325200-74332600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:74325400-74329600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr5:74325400-74329800	Weak transcription	Fetal Thymus	thymus
22	chr5:74325600-74331800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr5:74325600-74332600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr5:74325800-74329800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr5:74326600-74331200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:74326800-74330000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr5:74326800-74330200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:74326800-74331600	Strong transcription	Fetal Intestine Small	intestine
29	chr5:74327200-74328400	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr5:74327200-74330000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr5:74327200-74330000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr5:74327400-74328200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr5:74327400-74329800	Weak transcription	Spleen	Spleen
34	chr5:74327400-74332600	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr5:74327400-74333200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr5:74327600-74328400	Strong transcription	Primary T cells from cord blood	blood
37	chr5:74327600-74332600	Weak transcription	NHLF	lung
38	chr5:74327800-74328400	Genic enhancers	Gastric	stomach
39	chr5:74328000-74328200	Enhancers	Esophagus	oesophagus
40	chr5:74328000-74328600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr5:74328000-74328600	Enhancers	Pancreas	Pancrea
42	chr5:74328000-74329400	Strong transcription	Stomach Smooth Muscle	stomach
43	chr5:74328000-74330200	Enhancers	Primary T cells fromperipheralblood	blood
44	chr5:74328000-74339400	Weak transcription	Fetal Stomach	stomach

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