Variant report

Variant	rs62369164
Chromosome Location	chr5:74305967-74305968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11957690	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12516438	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34018438	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3811986	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3811987	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4285200	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4290996	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4492095	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4555772	0.88[AFR][1000 genomes]
rs4704166	0.93[EUR][1000 genomes]
rs56682994	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58243356	0.90[EUR][1000 genomes]
rs59923116	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59992473	0.88[EUR][1000 genomes]
rs61616736	0.95[EUR][1000 genomes]
rs62369160	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62369161	0.81[ASN][1000 genomes]
rs62369163	0.83[ASN][1000 genomes]
rs62369166	0.91[EUR][1000 genomes]
rs62369167	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6874469	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72768303	0.91[ASN][1000 genomes]
rs7706858	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7725085	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7726378	0.88[EUR][1000 genomes]
rs7734427	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74303000-74306200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:74303600-74316000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:74304400-74307000	Enhancers	Primary hematopoietic stem cells	blood
4	chr5:74304600-74306800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:74305400-74307400	Enhancers	Stomach Mucosa	stomach
6	chr5:74305600-74306000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:74305600-74306200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:74305600-74306200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:74305600-74306400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:74305800-74306000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr5:74305800-74306400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr5:74305800-74308400	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links