Variant report

Variant	rs62369160
Chromosome Location	chr5:74303561-74303562
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr5:74303224-74303749	IMR90	lung:	n/a	n/a
2	CEBPB	chr5:74303202-74303580	IMR90	lung:	n/a	n/a
3	MXI1	chr5:74303287-74303698	IMR90	lung:	n/a	n/a
4	FOXP2	chr5:74303348-74303621	SK-N-MC	brain:	n/a	n/a
5	MAX	chr5:74303293-74303630	NB4	blood:	n/a	n/a
6	CTCF	chr5:74303420-74303570	AG04449	skin:	n/a	n/a
7	RCOR1	chr5:74303141-74303766	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000249157	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10473971	0.96[AFR][1000 genomes]
rs11957690	0.89[EUR][1000 genomes]
rs12516438	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12651778	0.88[ASN][1000 genomes]
rs12657763	0.84[ASN][1000 genomes]
rs34018438	0.91[EUR][1000 genomes]
rs3811986	0.90[EUR][1000 genomes]
rs3811987	0.90[EUR][1000 genomes]
rs4285200	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4290996	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4492095	0.88[EUR][1000 genomes]
rs4704166	0.90[EUR][1000 genomes]
rs56682994	0.90[EUR][1000 genomes]
rs58243356	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59923116	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59992473	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60661930	0.82[ASN][1000 genomes]
rs61616736	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62369161	0.96[ASN][1000 genomes]
rs62369162	0.88[ASN][1000 genomes]
rs62369163	0.99[ASN][1000 genomes]
rs62369164	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62369166	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62369167	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6874469	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7706858	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7725085	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7726378	0.85[EUR][1000 genomes]
rs7734427	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74302200-74303600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr5:74302200-74304600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:74302400-74303600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:74302400-74303600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:74302400-74303800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:74302400-74304400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr5:74302600-74303600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:74302600-74303600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:74302600-74303600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:74302800-74303600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr5:74302800-74303600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:74302800-74303600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr5:74302800-74305600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:74303000-74303800	Weak transcription	NHDF-Ad	bronchial
15	chr5:74303000-74306200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:74303200-74303600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr5:74303200-74304600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:74303400-74303600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr5:74303400-74303600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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