Variant report

Variant	rs62369163
Chromosome Location	chr5:74305804-74305805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12516438	0.97[ASN][1000 genomes]
rs12651778	0.89[ASN][1000 genomes]
rs12657763	0.85[ASN][1000 genomes]
rs59923116	0.97[ASN][1000 genomes]
rs60661930	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62369160	0.99[ASN][1000 genomes]
rs62369161	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62369162	0.89[ASN][1000 genomes]
rs62369164	0.83[ASN][1000 genomes]
rs62369166	0.95[ASN][1000 genomes]
rs6874469	0.97[ASN][1000 genomes]
rs72768311	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7725085	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74303000-74306200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:74303600-74316000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:74304400-74307000	Enhancers	Primary hematopoietic stem cells	blood
4	chr5:74304600-74306800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:74305400-74307400	Enhancers	Stomach Mucosa	stomach
6	chr5:74305600-74306000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:74305600-74306200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:74305600-74306200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:74305600-74306400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:74305800-74306000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr5:74305800-74306400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr5:74305800-74308400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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