Variant report

Variant	rs6874469
Chromosome Location	chr5:74310404-74310405
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10473971	0.86[AFR][1000 genomes]
rs11957690	0.89[EUR][1000 genomes]
rs12516438	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12651778	0.88[ASN][1000 genomes]
rs12657763	0.83[ASN][1000 genomes]
rs34018438	0.91[EUR][1000 genomes]
rs3811986	0.90[EUR][1000 genomes]
rs3811987	0.90[EUR][1000 genomes]
rs4285200	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4290996	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4492095	0.88[EUR][1000 genomes]
rs4555772	0.81[AFR][1000 genomes]
rs4704166	0.90[EUR][1000 genomes]
rs56682994	0.90[EUR][1000 genomes]
rs58243356	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59923116	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59992473	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60661930	0.83[ASN][1000 genomes]
rs61616736	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62369160	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62369161	0.94[ASN][1000 genomes]
rs62369162	0.86[ASN][1000 genomes]
rs62369163	0.97[ASN][1000 genomes]
rs62369164	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62369166	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62369167	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7706858	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7725085	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7726378	0.85[EUR][1000 genomes]
rs7734427	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74303600-74316000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links