Variant report

Variant	rs12651778
Chromosome Location	chr5:74301633-74301634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12515891	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12516438	0.86[ASN][1000 genomes]
rs12655792	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.86[TSI][hapmap]
rs12657184	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap]
rs12657763	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4704166	0.92[CHB][hapmap]
rs59923116	0.86[ASN][1000 genomes]
rs62369160	0.88[ASN][1000 genomes]
rs62369161	0.86[ASN][1000 genomes]
rs62369162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62369163	0.89[ASN][1000 genomes]
rs62369166	0.86[ASN][1000 genomes]
rs62369188	0.85[EUR][1000 genomes]
rs6874469	0.88[ASN][1000 genomes]
rs72768303	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7736471	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74301000-74302200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr5:74301400-74302000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr5:74301600-74301800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
4	chr5:74301600-74301800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links