Variant report

Variant	rs6080131
Chromosome Location	chr20:16106040-16106041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1159643	0.94[ASN][1000 genomes]
rs1535597	0.88[EUR][1000 genomes]
rs17726942	0.91[EUR][1000 genomes]
rs1885943	0.84[EUR][1000 genomes]
rs1969774	0.82[ASN][1000 genomes]
rs2327989	0.82[EUR][1000 genomes]
rs4142099	0.93[EUR][1000 genomes]
rs4239715	0.82[EUR][1000 genomes]
rs4239716	0.82[EUR][1000 genomes]
rs4814437	0.82[EUR][1000 genomes]
rs4814439	0.82[EUR][1000 genomes]
rs4814440	0.82[EUR][1000 genomes]
rs6043753	0.94[EUR][1000 genomes]
rs6075014	0.89[EUR][1000 genomes]
rs6075015	0.91[EUR][1000 genomes]
rs6075017	0.92[EUR][1000 genomes]
rs6075018	0.93[EUR][1000 genomes]
rs6075019	0.93[EUR][1000 genomes]
rs6080128	0.88[EUR][1000 genomes]
rs6080134	0.93[EUR][1000 genomes]
rs6080147	0.82[EUR][1000 genomes]
rs6080148	0.81[EUR][1000 genomes]
rs6110905	0.83[EUR][1000 genomes]
rs6110922	0.80[EUR][1000 genomes]
rs6131779	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16104400-16121600	Weak transcription	Primary B cells from cord blood	blood
2	chr20:16104800-16106800	Enhancers	Liver	Liver
3	chr20:16104800-16107400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr20:16105200-16106200	Enhancers	HepG2	liver
5	chr20:16105800-16106400	Enhancers	Primary B cells from peripheral blood	blood
6	chr20:16105800-16107400	Enhancers	Fetal Heart	heart
7	chr20:16106000-16106600	Enhancers	Aorta	Aorta
8	chr20:16106000-16106600	Enhancers	Psoas Muscle	Psoas
9	chr20:16106000-16106600	Enhancers	Spleen	Spleen
10	chr20:16106000-16106600	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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