Variant report

Variant	rs60825597
Chromosome Location	chr7:28082125-28082126
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:28077430..28079703-chr7:28081300..28083598,3	K562	blood:
2	chr7:28077761..28080354-chr7:28081321..28085953,4	K562	blood:
3	chr7:28073836..28076003-chr7:28081587..28083353,2	MCF-7	breast:
4	chr7:28080517..28083399-chr7:28084471..28087034,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs57516014	1.00[AMR][1000 genomes]
rs58890703	1.00[AMR][1000 genomes]
rs60912742	1.00[AMR][1000 genomes]
rs61474284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6975894	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302940	1.00[AMR][1000 genomes]
rs73683932	1.00[AMR][1000 genomes]
rs73683933	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683935	1.00[AMR][1000 genomes]
rs73683936	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683937	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683938	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683941	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683949	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683952	1.00[AMR][1000 genomes]
rs73683973	1.00[AMR][1000 genomes]
rs73684087	1.00[AMR][1000 genomes]
rs73685831	1.00[AMR][1000 genomes]
rs7794172	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28073200-28082600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr7:28074400-28085800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:28074600-28084200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:28075600-28082400	Enhancers	HSMMtube	muscle
5	chr7:28076200-28082200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:28076600-28082200	Weak transcription	Lung	lung
7	chr7:28076800-28082200	Enhancers	HSMM	muscle
8	chr7:28076800-28084000	Weak transcription	Aorta	Aorta
9	chr7:28077400-28083000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:28077400-28084000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:28077400-28094200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr7:28077600-28097600	Weak transcription	Ovary	ovary
13	chr7:28077600-28102000	Weak transcription	Psoas Muscle	Psoas
14	chr7:28078200-28082400	Enhancers	NHLF	lung
15	chr7:28079800-28082400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:28080000-28082600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:28080000-28084400	Strong transcription	Primary B cells from cord blood	blood
18	chr7:28080800-28083200	Enhancers	Placenta	Placenta
19	chr7:28081000-28084000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:28081200-28082200	Enhancers	NHDF-Ad	bronchial
21	chr7:28081200-28082800	Enhancers	HMEC	breast
22	chr7:28081200-28083000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:28081200-28085200	Enhancers	A549	lung
24	chr7:28081600-28082400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr7:28081800-28082200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr7:28081800-28083400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:28081800-28084000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:28081800-28084400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr7:28081800-28084400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:28081800-28092600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:28082000-28083000	Enhancers	NHEK	skin
32	chr7:28082000-28083800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr7:28082000-28084400	Weak transcription	Osteobl	bone
34	chr7:28082000-28085200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:28082000-28086600	Weak transcription	Colon Smooth Muscle	Colon
36	chr7:28082000-28092000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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