Variant report

Variant	rs7794172
Chromosome Location	chr7:28086584-28086585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:28080517..28083399-chr7:28084471..28087034,2	K562	blood:
2	chr7:28077575..28079489-chr7:28085709..28088092,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs57516014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58890703	1.00[AMR][1000 genomes]
rs60825597	1.00[AMR][1000 genomes]
rs60912742	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61474284	1.00[AMR][1000 genomes]
rs6975894	1.00[AMR][1000 genomes]
rs73302940	1.00[AMR][1000 genomes]
rs73683932	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683933	1.00[AMR][1000 genomes]
rs73683935	1.00[AMR][1000 genomes]
rs73683936	1.00[AMR][1000 genomes]
rs73683937	1.00[AMR][1000 genomes]
rs73683938	1.00[AMR][1000 genomes]
rs73683940	1.00[AMR][1000 genomes]
rs73683941	1.00[AMR][1000 genomes]
rs73683943	1.00[AMR][1000 genomes]
rs73683949	1.00[AMR][1000 genomes]
rs73683952	1.00[AMR][1000 genomes]
rs73683973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684087	1.00[AMR][1000 genomes]
rs73685831	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28077400-28094200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr7:28077600-28097600	Weak transcription	Ovary	ovary
3	chr7:28077600-28102000	Weak transcription	Psoas Muscle	Psoas
4	chr7:28081800-28092600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:28082000-28086600	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:28082000-28092000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:28082200-28091800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:28082200-28092000	Weak transcription	HSMM	muscle
9	chr7:28082400-28092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:28082400-28092000	Weak transcription	NHLF	lung
11	chr7:28083400-28094000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr7:28084400-28094000	Weak transcription	Primary B cells from cord blood	blood
13	chr7:28085000-28087600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:28085200-28088000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:28085200-28091800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:28085200-28091800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:28085200-28092200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:28086000-28092000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:28086200-28093400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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