Variant report

Variant	rs73683933
Chromosome Location	chr7:28058702-28058703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs57516014	1.00[AMR][1000 genomes]
rs57781449	1.00[AMR][1000 genomes]
rs58890703	1.00[AMR][1000 genomes]
rs60825597	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60912742	1.00[AMR][1000 genomes]
rs61474284	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6975894	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302940	1.00[AMR][1000 genomes]
rs73683932	1.00[AMR][1000 genomes]
rs73683935	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683940	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683941	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683943	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683949	1.00[AMR][1000 genomes]
rs73683952	1.00[AMR][1000 genomes]
rs73683973	1.00[AMR][1000 genomes]
rs73684087	1.00[AMR][1000 genomes]
rs73685831	1.00[AMR][1000 genomes]
rs7794172	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28038600-28058800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:28045400-28060000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:28045400-28076200	Weak transcription	Gastric	stomach
4	chr7:28045600-28060000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:28046000-28058800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:28046000-28060000	Weak transcription	Ovary	ovary
7	chr7:28052400-28060000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:28054600-28059800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:28054600-28059800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:28054600-28060200	Weak transcription	Fetal Brain Female	brain
11	chr7:28054800-28059800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:28054800-28059800	Weak transcription	Fetal Stomach	stomach
13	chr7:28054800-28062000	Enhancers	Colon Smooth Muscle	Colon
14	chr7:28054800-28073400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:28055000-28059800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:28055400-28058800	Strong transcription	Primary B cells from cord blood	blood
17	chr7:28055400-28059600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr7:28055600-28058800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:28055600-28060600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:28055800-28059600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:28055800-28059800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr7:28055800-28072400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:28056000-28059800	Weak transcription	Adipose Nuclei	Adipose
24	chr7:28056200-28059600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr7:28056200-28060000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:28056200-28060000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr7:28056200-28066400	Weak transcription	Esophagus	oesophagus
28	chr7:28056200-28072400	Weak transcription	Spleen	Spleen
29	chr7:28056400-28059800	Weak transcription	Right Ventricle	heart
30	chr7:28056400-28064400	Weak transcription	Aorta	Aorta
31	chr7:28056400-28072200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr7:28056600-28060600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:28056600-28060600	Enhancers	NHDF-Ad	bronchial
34	chr7:28056800-28059200	Enhancers	NH-A	brain
35	chr7:28057000-28059000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr7:28057000-28059200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr7:28057000-28059200	Enhancers	HSMM	muscle
38	chr7:28057000-28059800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:28057000-28060000	Enhancers	Osteobl	bone
40	chr7:28057200-28058800	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr7:28057200-28058800	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr7:28057200-28058800	Enhancers	A549	lung
43	chr7:28057200-28060000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr7:28057200-28061000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr7:28057400-28059800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr7:28057400-28059800	Weak transcription	HMEC	breast
47	chr7:28057400-28059800	Weak transcription	HUVEC	blood vessel
48	chr7:28057400-28060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr7:28057600-28059800	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr7:28057800-28059800	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links