Variant report

Variant	rs6975894
Chromosome Location	chr7:28071841-28071842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:28067953..28070133-chr7:28071746..28074645,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs57516014	1.00[AMR][1000 genomes]
rs58890703	1.00[AMR][1000 genomes]
rs60825597	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60912742	1.00[AMR][1000 genomes]
rs61474284	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6968592	1.00[YRI][hapmap]
rs73302940	1.00[AMR][1000 genomes]
rs73683932	1.00[AMR][1000 genomes]
rs73683933	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683935	1.00[AMR][1000 genomes]
rs73683936	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683937	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683938	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683940	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683943	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683949	1.00[AMR][1000 genomes]
rs73683952	1.00[AMR][1000 genomes]
rs73683973	1.00[AMR][1000 genomes]
rs73684087	1.00[AMR][1000 genomes]
rs73685831	1.00[AMR][1000 genomes]
rs7794172	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28045400-28076200	Weak transcription	Gastric	stomach
2	chr7:28054800-28073400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:28055800-28072400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:28056200-28072400	Weak transcription	Spleen	Spleen
5	chr7:28056400-28072200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:28057800-28076200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:28058000-28076200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:28060000-28076000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:28060200-28073800	Weak transcription	NHLF	lung
10	chr7:28060200-28076000	Weak transcription	HUVEC	blood vessel
11	chr7:28060400-28073800	Weak transcription	Liver	Liver
12	chr7:28060600-28075200	Weak transcription	HMEC	breast
13	chr7:28060600-28076600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr7:28060800-28072400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:28060800-28072800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:28060800-28073000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:28060800-28075600	Weak transcription	HSMMtube	muscle
18	chr7:28061400-28076000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:28062000-28076400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:28063000-28076400	Enhancers	Colon Smooth Muscle	Colon
21	chr7:28064600-28072400	Weak transcription	Small Intestine	intestine
22	chr7:28064800-28072400	Weak transcription	Right Ventricle	heart
23	chr7:28064800-28076800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr7:28067000-28072400	Weak transcription	Left Ventricle	heart
25	chr7:28067600-28078600	Weak transcription	Fetal Stomach	stomach
26	chr7:28068800-28076600	Weak transcription	Fetal Heart	heart
27	chr7:28069000-28076000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr7:28069200-28072200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:28069200-28073000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:28069200-28073800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:28069200-28075600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:28069600-28073200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:28069600-28073800	Weak transcription	NHDF-Ad	bronchial
34	chr7:28069600-28073800	Weak transcription	Osteobl	bone
35	chr7:28069600-28075600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr7:28069800-28072000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:28069800-28073000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr7:28069800-28073400	Enhancers	A549	lung
39	chr7:28069800-28075200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr7:28070400-28073200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:28071000-28078600	Enhancers	Rectal Smooth Muscle	rectum
42	chr7:28071400-28074200	Weak transcription	Ovary	ovary
43	chr7:28071400-28074400	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr7:28071600-28076000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr7:28071600-28080000	Weak transcription	Primary B cells from cord blood	blood

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