Variant report

Variant	rs73302940
Chromosome Location	chr7:28124277-28124278
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:28118986..28120814-chr7:28123517..28125115,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs57516014	1.00[AMR][1000 genomes]
rs58890703	1.00[AMR][1000 genomes]
rs60825597	1.00[AMR][1000 genomes]
rs60912742	1.00[AMR][1000 genomes]
rs61474284	1.00[AMR][1000 genomes]
rs6975894	1.00[AMR][1000 genomes]
rs73683932	1.00[AMR][1000 genomes]
rs73683933	1.00[AMR][1000 genomes]
rs73683935	1.00[AMR][1000 genomes]
rs73683936	1.00[AMR][1000 genomes]
rs73683937	1.00[AMR][1000 genomes]
rs73683938	1.00[AMR][1000 genomes]
rs73683940	1.00[AMR][1000 genomes]
rs73683941	1.00[AMR][1000 genomes]
rs73683943	1.00[AMR][1000 genomes]
rs73683949	1.00[AMR][1000 genomes]
rs73683952	1.00[AMR][1000 genomes]
rs73683973	1.00[AMR][1000 genomes]
rs7794172	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28094600-28128600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:28102400-28176400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:28108800-28134600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:28109800-28128000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:28110800-28133800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:28117200-28130800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:28117600-28143400	Weak transcription	Aorta	Aorta
8	chr7:28118000-28127600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:28118000-28128800	Weak transcription	NHLF	lung
10	chr7:28118000-28136200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:28118400-28127200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:28119200-28129000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:28120000-28124800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:28120800-28127600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:28121000-28126600	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:28121000-28127600	Weak transcription	Right Atrium	heart
17	chr7:28121000-28136400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr7:28121200-28125800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:28121200-28127600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:28121200-28135200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:28121400-28125600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr7:28121800-28124800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr7:28121800-28124800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:28121800-28124800	Enhancers	Placenta	Placenta
25	chr7:28122200-28124400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr7:28122200-28124800	Enhancers	Adipose Nuclei	Adipose
27	chr7:28122400-28124400	Enhancers	Stomach Smooth Muscle	stomach
28	chr7:28122400-28124600	Enhancers	Liver	Liver
29	chr7:28122400-28124600	Enhancers	Colon Smooth Muscle	Colon
30	chr7:28122600-28124600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr7:28122600-28124600	Enhancers	HSMMtube	muscle
32	chr7:28122600-28124800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr7:28122800-28124400	Enhancers	HSMM	muscle
34	chr7:28122800-28124800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:28122800-28124800	Genic enhancers	Primary B cells from cord blood	blood
36	chr7:28122800-28143400	Weak transcription	Spleen	Spleen
37	chr7:28123000-28124400	Enhancers	Fetal Heart	heart
38	chr7:28123000-28124600	Enhancers	NHDF-Ad	bronchial
39	chr7:28123000-28124800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr7:28123000-28127400	Weak transcription	Right Ventricle	heart
41	chr7:28123000-28135200	Weak transcription	Left Ventricle	heart
42	chr7:28123200-28124600	Enhancers	HMEC	breast
43	chr7:28123200-28125800	Weak transcription	Psoas Muscle	Psoas
44	chr7:28123200-28126000	Weak transcription	Brain Anterior Caudate	brain
45	chr7:28123400-28124400	Enhancers	A549	lung
46	chr7:28123600-28124400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:28123600-28124400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr7:28123600-28124800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:28123600-28126400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr7:28124000-28124400	Weak transcription	Brain Substantia Nigra	brain

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