Variant report

Variant	rs60851352
Chromosome Location	chr8:69711237-69711238
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69710149..69712377-chr8:69714032..69716138,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10087916	1.00[ASN][1000 genomes]
rs10096163	1.00[ASN][1000 genomes]
rs10101154	1.00[ASN][1000 genomes]
rs10102823	1.00[ASN][1000 genomes]
rs10103145	1.00[ASN][1000 genomes]
rs10282983	1.00[ASN][1000 genomes]
rs10504430	1.00[ASN][1000 genomes]
rs10504431	1.00[ASN][1000 genomes]
rs11989456	1.00[ASN][1000 genomes]
rs11991238	1.00[ASN][1000 genomes]
rs11991242	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993928	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541228	1.00[ASN][1000 genomes]
rs12543555	1.00[ASN][1000 genomes]
rs12543778	1.00[ASN][1000 genomes]
rs12544474	1.00[ASN][1000 genomes]
rs12549215	1.00[ASN][1000 genomes]
rs12550386	1.00[ASN][1000 genomes]
rs16919100	1.00[ASN][1000 genomes]
rs16934882	1.00[ASN][1000 genomes]
rs16934967	1.00[ASN][1000 genomes]
rs17386888	1.00[ASN][1000 genomes]
rs17387279	1.00[ASN][1000 genomes]
rs17389337	1.00[ASN][1000 genomes]
rs1865442	1.00[ASN][1000 genomes]
rs2117491	1.00[ASN][1000 genomes]
rs2164198	1.00[ASN][1000 genomes]
rs2164199	1.00[ASN][1000 genomes]
rs35013559	1.00[ASN][1000 genomes]
rs4326370	1.00[ASN][1000 genomes]
rs55915240	1.00[ASN][1000 genomes]
rs56064105	1.00[ASN][1000 genomes]
rs56372923	1.00[ASN][1000 genomes]
rs57486369	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59328859	1.00[ASN][1000 genomes]
rs59959493	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982162	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000878	1.00[ASN][1000 genomes]
rs7009165	1.00[ASN][1000 genomes]
rs7011624	1.00[ASN][1000 genomes]
rs7012824	1.00[ASN][1000 genomes]
rs72666766	1.00[ASN][1000 genomes]
rs72666772	1.00[ASN][1000 genomes]
rs72666774	1.00[ASN][1000 genomes]
rs72666780	1.00[ASN][1000 genomes]
rs72666790	1.00[ASN][1000 genomes]
rs72666796	1.00[ASN][1000 genomes]
rs72666799	1.00[ASN][1000 genomes]
rs72668503	1.00[ASN][1000 genomes]
rs72668504	1.00[ASN][1000 genomes]
rs73283854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812576	1.00[ASN][1000 genomes]
rs7845052	1.00[ASN][1000 genomes]
rs7846438	1.00[ASN][1000 genomes]
rs7846688	1.00[ASN][1000 genomes]
rs974335	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1017131	chr8:69676989-69792515	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69702800-69711800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr8:69704200-69711800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:69704200-69713200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:69708200-69712000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:69708400-69713200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:69708600-69711400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:69710000-69711400	Enhancers	Osteobl	bone
8	chr8:69710000-69711800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:69710400-69711400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr8:69710400-69711400	Enhancers	HSMM	muscle
11	chr8:69710400-69711800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:69710600-69711400	Enhancers	NHDF-Ad	bronchial
13	chr8:69710600-69711800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:69711200-69711400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr8:69711200-69711800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr8:69711200-69713400	Enhancers	HUES6 Cell Line	embryonic stem cell

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