Variant report

Variant	rs11989456
Chromosome Location	chr8:69580838-69580839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10087916	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096163	0.93[CEU][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101154	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102823	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10103145	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282983	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504430	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10504431	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11991238	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991242	1.00[ASN][1000 genomes]
rs11993687	0.81[YRI][hapmap]
rs11993928	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12541228	1.00[ASN][1000 genomes]
rs12543555	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12543778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12544468	1.00[CHB][hapmap]
rs12544474	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12545316	1.00[CHB][hapmap]
rs12549215	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550386	1.00[ASN][1000 genomes]
rs16919100	1.00[CHB][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16934882	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934890	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs16934967	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17386888	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17387279	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17389337	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17478857	1.00[CHB][hapmap]
rs1865442	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2117491	1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164198	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35013559	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4326370	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55915240	1.00[ASN][1000 genomes]
rs56064105	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56372923	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57486369	1.00[ASN][1000 genomes]
rs59328859	1.00[ASN][1000 genomes]
rs59959493	1.00[ASN][1000 genomes]
rs60851352	1.00[ASN][1000 genomes]
rs6982162	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7000878	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7009165	1.00[ASN][1000 genomes]
rs7011624	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7012051	0.85[ASW][hapmap]
rs7012824	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666766	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666772	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666774	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666780	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666790	1.00[ASN][1000 genomes]
rs72666796	1.00[ASN][1000 genomes]
rs72666799	1.00[ASN][1000 genomes]
rs72668503	1.00[ASN][1000 genomes]
rs72668504	1.00[ASN][1000 genomes]
rs73283854	1.00[ASN][1000 genomes]
rs7812576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845052	1.00[ASN][1000 genomes]
rs7846438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846688	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298135	1.00[CHB][hapmap];0.81[TSI][hapmap]
rs974335	1.00[CHB][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11989456	C8orf44	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69578600-69581000	Weak transcription	Pancreas	Pancrea

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