Variant report

Variant	rs17389337
Chromosome Location	chr8:69644062-69644063
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:69642750..69644961-chr8:69646657..69649716,3	MCF-7	breast:
2	chr8:69533205..69534813-chr8:69643253..69646107,2	MCF-7	breast:
3	chr8:69641983..69644775-chr8:69764738..69766361,2	MCF-7	breast:
4	chr8:69533271..69537103-chr8:69641120..69648413,10	MCF-7	breast:
5	chr8:69617982..69620073-chr8:69643463..69645434,2	MCF-7	breast:
6	chr8:69490101..69493148-chr8:69643448..69647067,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254337	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10087916	1.00[ASN][1000 genomes]
rs10096163	1.00[ASN][1000 genomes]
rs10101154	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10102823	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10103145	1.00[ASN][1000 genomes]
rs10282983	1.00[ASN][1000 genomes]
rs10504430	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10504431	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11989456	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11991238	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11991242	1.00[ASN][1000 genomes]
rs11993928	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12541228	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12543555	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12543778	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12544468	1.00[CHB][hapmap]
rs12544474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12545316	1.00[CHB][hapmap]
rs12549215	1.00[ASN][1000 genomes]
rs12550386	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919100	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16934882	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16934890	1.00[CHB][hapmap]
rs16934967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17386888	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17387279	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17478857	1.00[CHB][hapmap]
rs1865442	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2117491	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2164198	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2164199	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs35013559	1.00[ASN][1000 genomes]
rs4326370	1.00[ASN][1000 genomes]
rs55915240	1.00[ASN][1000 genomes]
rs56064105	1.00[ASN][1000 genomes]
rs56372923	1.00[ASN][1000 genomes]
rs57486369	1.00[ASN][1000 genomes]
rs59328859	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59959493	1.00[ASN][1000 genomes]
rs60851352	1.00[ASN][1000 genomes]
rs6982162	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7000878	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009165	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011624	1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012824	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72666766	1.00[ASN][1000 genomes]
rs72666772	1.00[ASN][1000 genomes]
rs72666774	1.00[ASN][1000 genomes]
rs72666780	1.00[ASN][1000 genomes]
rs72666790	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72666796	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72666799	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72668503	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72668504	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73283854	1.00[ASN][1000 genomes]
rs7812576	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7845052	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846438	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7846688	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9298135	1.00[CHB][hapmap]
rs974335	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69638000-69646400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:69640200-69645200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:69640200-69676800	Weak transcription	Aorta	Aorta
4	chr8:69641000-69644400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:69641000-69644600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:69641200-69644200	Enhancers	NHLF	lung
7	chr8:69641600-69646400	Enhancers	Hela-S3	cervix
8	chr8:69642200-69646600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:69642400-69644400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:69642400-69645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:69642400-69650800	Weak transcription	Fetal Lung	lung
12	chr8:69643200-69645400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:69643200-69645800	Weak transcription	NHEK	skin
14	chr8:69643200-69646400	Weak transcription	HSMMtube	muscle
15	chr8:69643400-69644200	Enhancers	Fetal Brain Male	brain
16	chr8:69643400-69645400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:69643400-69645400	Weak transcription	HMEC	breast
18	chr8:69643400-69645400	Weak transcription	HSMM	muscle
19	chr8:69643400-69645600	Weak transcription	NH-A	brain
20	chr8:69643600-69645400	Weak transcription	NHDF-Ad	bronchial
21	chr8:69643800-69644200	Flanking Active TSS	A549	lung
22	chr8:69643800-69644200	Weak transcription	Osteobl	bone
23	chr8:69643800-69646000	Enhancers	Liver	Liver
24	chr8:69644000-69644200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:69644000-69644400	Flanking Active TSS	HUVEC	blood vessel

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