Variant report

Variant	rs9298135
Chromosome Location	chr8:69567266-69567267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10087916	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10088350	0.84[AFR][1000 genomes]
rs10101154	1.00[CHB][hapmap]
rs10102823	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10504430	1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10504431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11986585	0.86[YRI][hapmap]
rs11989456	1.00[CHB][hapmap];0.81[TSI][hapmap]
rs11991238	1.00[CHB][hapmap]
rs11993928	1.00[CHB][hapmap]
rs12543555	1.00[CHB][hapmap]
rs12543778	1.00[CHB][hapmap]
rs12544468	1.00[CHB][hapmap]
rs12544474	1.00[CHB][hapmap]
rs12545316	1.00[CHB][hapmap]
rs12549215	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16919100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16934882	1.00[CHB][hapmap]
rs16934890	1.00[CHB][hapmap];0.81[TSI][hapmap]
rs16934967	1.00[CHB][hapmap]
rs17386888	1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs17387279	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17389337	1.00[CHB][hapmap]
rs17478857	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1865442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2117491	1.00[CHB][hapmap]
rs2164198	1.00[CHB][hapmap]
rs2164199	1.00[CHB][hapmap]
rs28719791	0.80[AFR][1000 genomes]
rs55915240	0.90[EUR][1000 genomes]
rs6982162	1.00[CHB][hapmap]
rs7000878	1.00[CHB][hapmap]
rs7011624	1.00[CHB][hapmap]
rs7012824	1.00[CHB][hapmap]
rs72666766	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72666774	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7812576	1.00[CHB][hapmap]
rs7846438	1.00[CHB][hapmap]
rs7846688	1.00[CHB][hapmap];0.81[TSI][hapmap]
rs974335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv972529	chr8:69561897-69568157	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69545200-69572800	Weak transcription	Aorta	Aorta

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