Variant report

Variant	rs2117491
Chromosome Location	chr8:69577345-69577346
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69576551..69578510-chr8:69582270..69584407,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10087916	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096163	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101154	1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102823	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10103145	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282983	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504430	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10504431	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11989456	1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991238	1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991242	1.00[ASN][1000 genomes]
rs11993928	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12541228	1.00[ASN][1000 genomes]
rs12543555	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12543778	1.00[CHB][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12544468	1.00[CHB][hapmap]
rs12544474	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12545316	1.00[CHB][hapmap]
rs12549215	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550386	1.00[ASN][1000 genomes]
rs16919100	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16934882	1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934890	1.00[CHB][hapmap]
rs16934967	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17386888	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17387279	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17389337	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17478857	1.00[CHB][hapmap]
rs1865442	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2164198	1.00[CHB][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164199	1.00[CHB][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35013559	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4326370	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55915240	1.00[ASN][1000 genomes]
rs56064105	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56372923	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57486369	1.00[ASN][1000 genomes]
rs59328859	1.00[ASN][1000 genomes]
rs59959493	1.00[ASN][1000 genomes]
rs60851352	1.00[ASN][1000 genomes]
rs6982162	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7000878	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7009165	1.00[ASN][1000 genomes]
rs7011624	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7012824	1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666766	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666772	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666774	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666780	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666790	1.00[ASN][1000 genomes]
rs72666796	1.00[ASN][1000 genomes]
rs72666799	1.00[ASN][1000 genomes]
rs72668503	1.00[ASN][1000 genomes]
rs72668504	1.00[ASN][1000 genomes]
rs73283854	1.00[ASN][1000 genomes]
rs7812576	1.00[CHB][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845052	1.00[ASN][1000 genomes]
rs7846438	1.00[CHB][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846688	1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298135	1.00[CHB][hapmap]
rs974335	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69574800-69579600	Weak transcription	Aorta	Aorta
2	chr8:69577000-69577400	Weak transcription	NHDF-Ad	bronchial

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