Variant report

Variant	rs16934967
Chromosome Location	chr8:69642540-69642541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69641983..69644775-chr8:69764738..69766361,2	MCF-7	breast:
2	chr8:69533271..69537103-chr8:69641120..69648413,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254337	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10087916	1.00[ASN][1000 genomes]
rs10096163	1.00[ASN][1000 genomes]
rs10101154	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10102823	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10103145	1.00[ASN][1000 genomes]
rs10282983	1.00[ASN][1000 genomes]
rs10504430	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10504431	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11989456	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11991238	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11991242	1.00[ASN][1000 genomes]
rs11993928	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12541228	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12543555	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12543778	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12544468	1.00[CHB][hapmap]
rs12544474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12545316	1.00[CHB][hapmap]
rs12549215	1.00[ASN][1000 genomes]
rs12550386	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919100	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16934882	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16934890	1.00[CHB][hapmap]
rs17386888	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17387279	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17389337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17478857	1.00[CHB][hapmap]
rs1865442	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2117491	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2164198	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2164199	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs35013559	1.00[ASN][1000 genomes]
rs4326370	1.00[ASN][1000 genomes]
rs55915240	1.00[ASN][1000 genomes]
rs56064105	1.00[ASN][1000 genomes]
rs56372923	1.00[ASN][1000 genomes]
rs57486369	1.00[ASN][1000 genomes]
rs59328859	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59959493	1.00[ASN][1000 genomes]
rs60851352	1.00[ASN][1000 genomes]
rs6982162	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6996725	0.81[ASW][hapmap];0.88[GIH][hapmap]
rs7000878	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009165	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011624	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012824	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72666766	1.00[ASN][1000 genomes]
rs72666772	1.00[ASN][1000 genomes]
rs72666774	1.00[ASN][1000 genomes]
rs72666780	1.00[ASN][1000 genomes]
rs72666790	1.00[ASN][1000 genomes]
rs72666796	1.00[ASN][1000 genomes]
rs72666799	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72668503	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72668504	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73283854	1.00[ASN][1000 genomes]
rs7812576	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7845052	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846438	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7846688	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9298135	1.00[CHB][hapmap]
rs974335	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69638000-69646400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:69640200-69645200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:69640200-69676800	Weak transcription	Aorta	Aorta
4	chr8:69641000-69644400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:69641000-69644600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:69641200-69643400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:69641200-69644200	Enhancers	NHLF	lung
8	chr8:69641400-69643600	Enhancers	NHDF-Ad	bronchial
9	chr8:69641400-69643800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:69641600-69643400	Enhancers	HMEC	breast
11	chr8:69641600-69643800	Enhancers	Osteobl	bone
12	chr8:69641600-69646400	Enhancers	Hela-S3	cervix
13	chr8:69641800-69643400	Enhancers	HSMM	muscle
14	chr8:69642000-69642600	Enhancers	Fetal Brain Male	brain
15	chr8:69642000-69643200	Enhancers	NHEK	skin
16	chr8:69642000-69644000	Enhancers	HUVEC	blood vessel
17	chr8:69642200-69642800	Enhancers	NH-A	brain
18	chr8:69642200-69643200	Enhancers	HSMMtube	muscle
19	chr8:69642200-69643800	Enhancers	A549	lung
20	chr8:69642200-69646600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:69642400-69644400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:69642400-69645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:69642400-69650800	Weak transcription	Fetal Lung	lung

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