Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:92640863..92641506-chr15:92748069..92748727,2	MCF-7	breast:
2	chr15:92640629..92641439-chr15:92748524..92749266,3	MCF-7	breast:
3	chr15:92748352..92748892-chr15:92768787..92769480,2	MCF-7	breast:
4	chr15:92641855..92642788-chr15:92748549..92749281,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

rSNPs within LD-proxies of this variant (count:18)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92748200-92748800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr15:92748200-92748800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:92748200-92748800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:92748200-92749000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr15:92748200-92749000	Enhancers	Left Ventricle	heart
6	chr15:92748200-92749200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr15:92748200-92749200	Enhancers	Brain Substantia Nigra	brain
8	chr15:92748200-92749400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr15:92748200-92749400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr15:92748200-92749400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:92748400-92748800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr15:92748400-92748800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr15:92748400-92748800	Enhancers	Fetal Heart	heart
14	chr15:92748400-92749000	Enhancers	Brain Angular Gyrus	brain
15	chr15:92748400-92749000	Enhancers	Brain Anterior Caudate	brain
16	chr15:92748400-92749000	Enhancers	Brain Cingulate Gyrus	brain
17	chr15:92748400-92749200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:92748400-92749400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr15:92748400-92749400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr15:92748600-92749000	Enhancers	Brain Hippocampus Middle	brain
21	chr15:92748600-92749200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr15:92748600-92749200	Enhancers	Liver	Liver

Quick Search: