Variant report

Variant	rs74030477
Chromosome Location	chr15:92641097-92641098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:92640864-92641173	T-47D	breast:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
2	CTCF	chr15:92640765-92641230	HepG2	liver:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
3	YY1	chr15:92640681-92641223	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr15:92640880-92641123	HepG2	liver:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
5	CTCF	chr15:92640980-92641130	WI-38	lung:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
6	MAFK	chr15:92640873-92641245	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTCF	chr15:92640625-92641104	GM19240	blood:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
8	CTCF	chr15:92640845-92641211	K562	blood:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
9	TBL1XR1	chr15:92640930-92641111	K562	blood:	n/a	n/a
10	CTCF	chr15:92640861-92641139	Lung_OC	lung:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
11	YY1	chr15:92640771-92641159	H1-hESC	embryonic stem cell:	n/a	n/a
12	RAD21	chr15:92640632-92641250	HCT-116	colon:	n/a	chr15:92640991-92641010
13	RAD21	chr15:92640790-92641208	HepG2	liver:	n/a	chr15:92640991-92641010
14	RAD21	chr15:92640443-92641678	SK-N-SH	brain:	n/a	chr15:92641521-92641534 chr15:92640991-92641010 chr15:92641575-92641589
15	CTCF	chr15:92640848-92641121	T-47D	breast:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
16	CTCF	chr15:92640788-92641103	GM12892	blood:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
17	CTCF	chr15:92640844-92641110	GM13977	blood:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
18	CTCF	chr15:92640833-92641116	MCF-7	breast:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
19	RAD21	chr15:92640672-92641396	HCT-116	colon:	n/a	chr15:92640991-92641010
20	CTCF	chr15:92640810-92641133	HepG2	liver:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
21	RAD21	chr15:92640788-92641205	HepG2	liver:	n/a	chr15:92640991-92641010
22	CTCF	chr15:92640960-92641110	BJ	skin:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
23	CTCF	chr15:92640695-92641192	GM12878	blood:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
24	RAD21	chr15:92640825-92641160	K562	blood:	n/a	chr15:92640991-92641010
25	CTCF	chr15:92640814-92641175	SK-N-SH_RA	brain:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
26	CTCF	chr15:92640716-92641242	K562	blood:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
27	CTCF	chr15:92640823-92641129	Gliobla	brain:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
28	RAD21	chr15:92640782-92641392	H1-hESC	embryonic stem cell:	n/a	chr15:92640991-92641010
29	SIN3A	chr15:92640644-92641154	H1-hESC	embryonic stem cell:	n/a	n/a
30	CTCF	chr15:92640726-92641278	HCT-116	colon:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
31	CTCF	chr15:92640960-92641110	HFF-Myc	foreskin:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
32	RAD21	chr15:92640604-92641337	A549	lung:	n/a	chr15:92640991-92641010
33	CTCF	chr15:92640719-92641233	A549	lung:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
34	RAD21	chr15:92640698-92641284	HepG2	liver:	n/a	chr15:92640991-92641010
35	CTCF	chr15:92640840-92641102	ProgFib	skin:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
36	STAT3	chr15:92640901-92641101	MCF10A-Er-Src	breast:	n/a	n/a
37	CTCF	chr15:92640784-92641141	ECC-1	luminal epithelium:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
38	CTCF	chr15:92640709-92641316	MCF-7	breast:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
39	CTCF	chr15:92640822-92641100	Fibrobl	skin:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
40	RAD21	chr15:92640859-92641120	K562	blood:	n/a	chr15:92640991-92641010
41	CTCF	chr15:92640841-92641127	GM12878	blood:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
42	CTCF	chr15:92640620-92641106	GM19239	blood:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
43	CTCF	chr15:92640836-92641150	LNCaP	prostate:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
44	CTCF	chr15:92640980-92641130	HCT-116	colon:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
45	RAD21	chr15:92640809-92641204	A549	lung:	n/a	chr15:92640991-92641010
46	RAD21	chr15:92640682-92641301	H1-hESC	embryonic stem cell:	n/a	chr15:92640991-92641010
47	CTCF	chr15:92640849-92641151	HUVEC	blood vessel:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
48	SMC3	chr15:92640789-92641277	GM12878	blood:	n/a	chr15:92640992-92641006
49	CTCF	chr15:92640849-92641103	GM10266	blood:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
50	CTCF	chr15:92640812-92641105	A549	lung:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007

Variant related genes	Relation type
SLCO3A1	TF binding region

rs_ID	r²[population]
rs60855340	1.00[AMR][1000 genomes]
rs74028809	1.00[AMR][1000 genomes]
rs74028810	1.00[AMR][1000 genomes]
rs74028819	1.00[AMR][1000 genomes]
rs74028823	1.00[AMR][1000 genomes]
rs74028831	1.00[AMR][1000 genomes]
rs74028833	1.00[AMR][1000 genomes]
rs74028883	1.00[AMR][1000 genomes]
rs74028892	1.00[AMR][1000 genomes]
rs74030431	1.00[AMR][1000 genomes]
rs74030465	1.00[AMR][1000 genomes]
rs74030490	1.00[AMR][1000 genomes]

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92626000-92651000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:92627400-92641200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:92630800-92641800	Weak transcription	NHEK	skin
4	chr15:92631400-92648800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:92632600-92641200	Weak transcription	Thymus	Thymus
6	chr15:92636000-92648600	Weak transcription	Adipose Nuclei	Adipose
7	chr15:92638000-92641200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr15:92638000-92641200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr15:92638000-92641400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr15:92638000-92641400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:92638000-92641600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:92638200-92641600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr15:92638200-92641600	Weak transcription	Ovary	ovary
14	chr15:92639400-92641400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr15:92639400-92641400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:92639400-92641600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:92639400-92643400	Weak transcription	Primary T cells from cord blood	blood
18	chr15:92639400-92661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:92639600-92641400	Enhancers	Primary hematopoietic stem cells	blood
20	chr15:92639600-92644800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:92639600-92645000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr15:92639800-92641400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:92639800-92641800	Weak transcription	Aorta	Aorta
24	chr15:92639800-92643400	Weak transcription	GM12878-XiMat	blood
25	chr15:92640000-92642200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:92640000-92652600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr15:92640200-92641200	Genic enhancers	Spleen	Spleen
28	chr15:92640400-92641600	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr15:92640400-92652400	Enhancers	Fetal Thymus	thymus
30	chr15:92640600-92641400	Enhancers	H9 Cell Line	embryonic stem cell
31	chr15:92640600-92641400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr15:92640600-92641400	Enhancers	Right Atrium	heart
33	chr15:92640600-92641400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr15:92640600-92641400	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr15:92640600-92641600	Enhancers	Lung	lung
36	chr15:92640600-92641800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr15:92640600-92641800	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr15:92640600-92641800	Enhancers	Fetal Brain Male	brain
39	chr15:92640600-92642000	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr15:92640600-92642000	Enhancers	Brain Cingulate Gyrus	brain
41	chr15:92640600-92642200	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr15:92640600-92642600	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr15:92640600-92642600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
44	chr15:92640600-92642600	Enhancers	H1 Cell Line	embryonic stem cell
45	chr15:92640600-92642600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:92640600-92642600	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr15:92640600-92642600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr15:92640600-92642600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr15:92640600-92642600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:92640600-92642600	Enhancers	Left Ventricle	heart

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