Variant report

Variant	rs74030465
Chromosome Location	chr15:92617553-92617554
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92611564..92613241-chr15:92617063..92619542,2	MCF-7	breast:
2	chr15:92397561..92399407-chr15:92617258..92620011,2	MCF-7	breast:
3	chr15:92617275..92618908-chr15:92634288..92637131,2	K562	blood:
4	chr15:92613588..92616911-chr15:92617353..92620743,5	MCF-7	breast:
5	chr15:92496027..92498083-chr15:92616983..92618525,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs60855340	1.00[AMR][1000 genomes]
rs74028809	1.00[AMR][1000 genomes]
rs74028810	1.00[AMR][1000 genomes]
rs74028819	1.00[AMR][1000 genomes]
rs74028823	1.00[AMR][1000 genomes]
rs74028831	1.00[AMR][1000 genomes]
rs74028833	1.00[AMR][1000 genomes]
rs74028883	1.00[AMR][1000 genomes]
rs74028892	1.00[AMR][1000 genomes]
rs74030431	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74030477	1.00[AMR][1000 genomes]
rs74030490	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92610800-92620400	Enhancers	Brain Substantia Nigra	brain
2	chr15:92613000-92617600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr15:92613000-92617800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:92613000-92620600	Weak transcription	Pancreas	Pancrea
5	chr15:92613200-92617600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:92613400-92617600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr15:92613400-92617600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr15:92613400-92617600	Weak transcription	NHLF	lung
9	chr15:92613400-92617800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:92613400-92618000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:92613400-92618000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:92613400-92621000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:92613600-92617600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:92613600-92617600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:92613600-92617600	Weak transcription	A549	lung
16	chr15:92613600-92617600	Weak transcription	HMEC	breast
17	chr15:92613600-92617600	Weak transcription	HUVEC	blood vessel
18	chr15:92613600-92620000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:92613600-92628600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:92613800-92617600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr15:92613800-92617600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:92614200-92621000	Enhancers	Fetal Heart	heart
23	chr15:92614200-92621200	Enhancers	Brain Hippocampus Middle	brain
24	chr15:92614400-92621000	Enhancers	Lung	lung
25	chr15:92614600-92617600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr15:92614600-92617600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr15:92614600-92617800	Weak transcription	Liver	Liver
28	chr15:92614600-92626600	Weak transcription	Psoas Muscle	Psoas
29	chr15:92615000-92617600	Weak transcription	Spleen	Spleen
30	chr15:92615000-92617600	Weak transcription	GM12878-XiMat	blood
31	chr15:92615000-92618000	Weak transcription	Fetal Thymus	thymus
32	chr15:92615000-92619400	Weak transcription	Fetal Brain Male	brain
33	chr15:92615000-92634200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr15:92615200-92617600	Weak transcription	Adipose Nuclei	Adipose
35	chr15:92615200-92618200	Weak transcription	Esophagus	oesophagus
36	chr15:92615200-92619200	Weak transcription	Fetal Brain Female	brain
37	chr15:92615400-92617600	Weak transcription	Brain Angular Gyrus	brain
38	chr15:92615400-92617600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr15:92615400-92617600	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr15:92615400-92617800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:92615800-92618200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:92616200-92619000	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr15:92616200-92621000	Enhancers	Left Ventricle	heart
44	chr15:92616400-92617600	Weak transcription	Stomach Mucosa	stomach
45	chr15:92616400-92619200	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr15:92616400-92619400	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr15:92616400-92619600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:92616400-92621000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr15:92616600-92617600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr15:92616600-92618000	Enhancers	Primary monocytes fromperipheralblood	blood

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