Variant report

Variant	rs74030431
Chromosome Location	chr15:92593048-92593049
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92582922..92584573-chr15:92591529..92593824,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs60855340	1.00[AMR][1000 genomes]
rs74028809	1.00[AMR][1000 genomes]
rs74028810	1.00[AMR][1000 genomes]
rs74028819	1.00[AMR][1000 genomes]
rs74028823	1.00[AMR][1000 genomes]
rs74028831	1.00[AMR][1000 genomes]
rs74028833	1.00[AMR][1000 genomes]
rs74028883	1.00[AMR][1000 genomes]
rs74030424	0.85[AFR][1000 genomes]
rs74030465	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74030477	1.00[AMR][1000 genomes]
rs74030490	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1049753	chr15:92587172-92600399	Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv9948	chr15:92588543-92606763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92581000-92593400	Weak transcription	Aorta	Aorta
2	chr15:92585400-92601200	Weak transcription	Fetal Brain Male	brain
3	chr15:92586000-92593200	Weak transcription	Gastric	stomach
4	chr15:92588000-92593400	Weak transcription	NHEK	skin
5	chr15:92588200-92593200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:92588200-92593600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:92591000-92595600	Enhancers	Left Ventricle	heart
8	chr15:92591000-92595800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr15:92591000-92595800	Enhancers	Brain Substantia Nigra	brain
10	chr15:92591000-92595800	Enhancers	Right Atrium	heart
11	chr15:92591200-92595800	Enhancers	Brain Cingulate Gyrus	brain
12	chr15:92591200-92610800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:92591400-92594600	Enhancers	Esophagus	oesophagus
14	chr15:92591400-92595600	Enhancers	Brain Hippocampus Middle	brain
15	chr15:92591600-92600200	Weak transcription	Ovary	ovary
16	chr15:92592200-92593600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:92592200-92594200	Enhancers	Spleen	Spleen
18	chr15:92592200-92594600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:92592200-92595600	Enhancers	Fetal Heart	heart
20	chr15:92592400-92594200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr15:92592400-92594800	Enhancers	Lung	lung
22	chr15:92592400-92595400	Enhancers	Right Ventricle	heart
23	chr15:92592600-92593400	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr15:92592600-92593600	Enhancers	Fetal Lung	lung
25	chr15:92592600-92593600	Enhancers	Fetal Muscle Leg	muscle
26	chr15:92592600-92593800	Enhancers	Fetal Stomach	stomach
27	chr15:92592600-92594000	Enhancers	Brain Angular Gyrus	brain
28	chr15:92592600-92594000	Enhancers	Brain Anterior Caudate	brain
29	chr15:92592600-92594200	Enhancers	Adipose Nuclei	Adipose
30	chr15:92592600-92595600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr15:92592800-92593200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr15:92592800-92593400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:92593000-92593800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:92593000-92594000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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